2015 Student Publications

Pei Z, Chen Q, Koren D, Giammarinaro B, Acaron Ledesma H, Wei W. Conditional Knock-Out of Vesicular GABA Transporter Gene from Starburst Amacrine Cells Reveals the Contributions of Multiple Synaptic Mechanisms Underlying Direction Selectivity in the Retina.  J Neurosci2015 Sep 23;35(38):13219-32. doi: 10.1523/JNEUROSCI.0933-15.2015. PMID: 26400950

Aiello BR, Iriarte-Diaz, J, Blob, RW, Butcher, MT, Carrano, MT, Espinoza, NR, Main, RP, Ross, CF.  Bone strain magnitude is correlated with bone strain rate in tetrapods: implications for models of mechanotransduction. Proceedings of the Royal Society B. (2015) 282: 20150321. PMID: 26063842

Albertin CB, Simakov O, Mitros T, Wang ZY, Pungor JR, Edsinger-Gonzales E, Brenner S, Ragsdale CW, Rokhsar DS.  The octopus genome and the evolution of cephalopod neural and morphological novelties. Nature. 2015 Aug 13;524(7564):220-4. doi: 10.1038/nature14668. PMID: 26268193

Shigeno S, Parnaik R, Albertin CB, Ragsdale CW.  Evidence for a cordal, not ganglionic, pattern of cephalopod brain neurogenesis. Zoological Lett. 2015 Sep 7;1:26. doi: 10.1186/s40851-015-0026-z. eCollection 2015. PMID: 26605071

Borowska MT, Dominik PK, Anghel SA, Kossiakoff AA, Keenan RJ.  A YidC-like Protein in the Archaeal Plasma Membrane.  Structure. 2015 Sep 1;23(9):1715-24. doi: 10.1016/j.str.2015.06.025. Epub 2015 Aug 6. PMID: 26256539  

Anthony, G., Cunliffe, A, Castillo, R, Pham, N., Guerrero, T., Armato, S., Al-Hallaq, H. SU-E-J-251: Incorporation of Pre-Therapy 18F-FDG Uptake with CT Texture Features in a Predictive Model for Radiation Pneumonitis DevelopmentMedical Physics 2015 Jun;42(6):3324. DOI: 10.1118/1.4924337

Sivan A, Corrales L, Hubert N, Williams JB, Aquino-Michaels K, Earley ZM, Benyamin FW, Lei YM, Jabri B, Alegre ML, Chang EB, Gajewski TF. Commensal Bifidobacterium promotes antitumor immunity and facilitates anti-PD-L1 efficacy.  Science. 2015 Nov 27;350(6264):1084-9. doi: 10.1126/science.aac4255. Epub 2015 Nov 5. PMID: 26541606

Gamazon ER, Wheeler HE, Shah KP, Mozaffari SV, Aquino-Michaels K, Carroll RJ, Eyler AE, Denny JC; GTEx Consortium, Nicolae DL, Cox NJ, Im HK. A gene-based association method for mapping traits using reference transcriptome data. Nat Genet. 2015 Sep;47(9):1091-8. doi: 10.1038/ng.3367. Epub 2015 Aug 10. PMID: 26258848

Hernandez W, Aquino-Michaels K, Drozda K, Patel S, Jeong Y, Takahashi H, Cavallari LH, Perera MA. Novel single nucleotide polymorphism in CYP2C9 is associated with changes in warfarin clearance and CYP2C9 expression levels in African Americans. Transl Res. 2015 Jun;165(6):651-7. doi: 10.1016/j.trsl.2014.11.006. Epub 2014 Nov 22. PMID: 25499099

Kathleen Bailey, Savic D, Zielinski M, Park SY, Wang LJ, Witkowski P, Brady M, Hara M, Bell GI, and Nobrega M. Evidence of non-pancreatic beta cell-dependent roles of Tcf7l2 in the regulation of glucose metabolism in mice. Human Molecular Genetics (2015) 24 (6): 1646-1654.

Chen, P, Bakke, D, Kolodziej, L, Lodolce, J, Weber, CR, Boone, DL, & Toback, FG (2015).  Antrum Mucosal Protein-18 Peptide Targets Tight Junctions to Protect and Heal Barrier Structure and Function in Models of Inflammatory Bowel Disease. Inflammatory Bowel Diseases, 0(0), 1.  doi:10.1097/MIB.0000000000000499  PMID: 26197453

Kagan CL, Banovich NE, Pavlovic BJ, Patterson K, Gallego Romero I, Pritchard JK, and Gilad Y.  Genetic Variation, Not Cell Type of Origin, Underlies Regulatory Differences in iPSCs. bioRxiv. 2015 Jan: http://dx.doi.org/10.1101/013888

Gallego Romero I, Pavlovic BJ, Hernando-Herraez I, Zhou X, Ward MC, Banovich NE, Kagan CL, Burnett JE, Huang CH, Mitrano A, Chavarria CI, Friedrich Ben-Nun I, Li Y, Sabatini K, Leonardo TR, Parast M, Marques-Bonet T, Laurent LC, Loring JF, Gilad Y.  A panel of induced pluripotent stem cells from chimpanzees: a resource for comparative functional genomics.  Elife. 2015 Jun 23;4. doi: 10.7554/eLife.07103.

Basant A, Lekomtsev S, Tse YC, Zhang D, Longhini KM, Petronczki M, Glotzer M. (2015) Aurora B Kinase Promotes Cytokinesis by Inducing Centralspindlin Oligomers that Associate with the Plasma Membrane. Dev Cell. 2015 Apr 20;33(2):204-15. doi: 10.1016/j.devcel.2015.03.015. PMID: 25898168

Liu X, Belcher AH, Grelewicz Z, Wiersma R.D.  Robotic real-time translational and rotational head motion correction during frameless stereotactic radiosurgery. Med. Phys. 2015 Jun; 42(6), 2757-63. PMCID: PMC4433479  PMID:26127028

Bershad AK, Kirkpatrick MG, Seiden JA, de Wit H. Effects of Acute Doses of Prosocial Drugs Methamphetamine and Alcohol on Plasma Oxytocin Levels. J Clin Psychopharmacol. 2015 Apr 7. [Epub ahead of print] PMID: 25853370

Bershad AK, Jaffe JH, Childs E, de Wit H. Opioid partial agonist buprenorphine dampens responses to psychosocial stress in humans. Psychoneuroendocrinology. 2015 Feb;52:281-8. doi: 10.1016/j.psyneuen.2014.12.004. Epub 2014 Dec 9 PMID: 25544740

Wardle MC, Bershad AK, de Wit H.  Naltrexone alters the processing of social and emotional stimuli in healthy adults.  Soc Neurosci. 2015 Dec 28. [Epub ahead of print]  PMID: 26710657

Miller MA, Bershad AK, de Wit H. Drug effects on responses to emotional facial expressions: recent findings.  Behav Pharmacol. 2015 Sep;26(6):571-9. doi: 10.1097/FBP.0000000000000164. PMID: 26226144

Takahashi K, Kim S, Coleman TP, Brown KA, Suminski AJ, Best MD, Hatsopoulos NG. Large-scale spatiotemporal spike patterning consistent with wave propagation in motor cortex. Nat Commun. 2015 May 21;6:7169. doi: 10.1038/ncomms8169. PMID: 25994554

Best M.D., Nakamura Y., Kijak N.A., Allen M.J., Lever T.E., Hatsopoulos N.G., Ross C.F., Takahashi K. Semiautomatic marker tracking of tongue positions captured by videofluoroscopy during primate feeding. IEEE EMBC 37th International Conference on Engineering in Medicine and Biology 2015; 2015:5347-50. doi: 10.1109/EMBC.2015.7319599. PMID: 26737499

Best M.D., Takahashi K. Hatsopoulos N.G. Comparing decoding performance between functionally defined neural populations. IEEE EMBS 7th International Conference on Neural Engineering 2015 July 2; DOI: 10.1109/NER.2015.7146545

Liu, C., B. Guenard, F.H. Garcia, S. Yamane, B. Blanchard, D. Yang, and E. Economo.  New records of ant species from Yunnan, China. Zookeys  2015 Jan 26; 477:17-78.   doi: 10.3897/zookeys.477.8775. eCollection 2015. PMID: 25685004

Blischak JD, Tailleux L, Mitrano A, Barreiro LB, Gilad Y.  Mycobacterial infection induces a specific human innate immune response. Sci Rep. 2015 Nov 20;5:16882. doi: 10.1038/srep16882. PMID: 26586179

Ojeda P,  Bobe A, Dolan K, Leone V, Martinez K.  Nutritional Modulation of Gut Microbiota - The Impact on Metabolic Disease Pathophysiology.  J Nutr Biochem 2015. Aug 20. pii: S0955-2863(15)00207-7. doi: 10.1016/j.jnutbio.2015.08.013. [Epub ahead of print] Review. PMID: 26372091

Chourasia AH, Tracy K, Frankenberger C, Boland ML, Sharifi MN, Drake LE, Sachleben JR, Asara JM, Locasale JW, Karczmar GS, Macleod KF.  Mitophagy defects arising from BNip3 loss promote mammary tumor progression to metastasis. EMBO Rep. 2015 Sep;16(9):1145-63. doi: 10.15252/embr.201540759. Epub 2015 Jul 31. PMID: 26232272

Chourasia AH, Boland ML, Macleod KF. Mitophagy and cancer. Cancer Metab. 2015 Mar 26;3:4. doi: 10.1186/s40170-015-0130-8. eCollection 2015. PMID: 25810907

Borowska MT, Dominik PK, Anghel SA, Kossiakoff AA, Keenan RJ.  A YidC-like Protein in the Archaeal Plasma Membrane.  Structure. 2015 Sep 1;23(9):1715-24. doi: 10.1016/j.str.2015.06.025. Epub 2015 Aug 6. PMID: 26256539  

Reyes, E.E., Gillard, M., Duggan, R., Wroblewski, K, Kregel, S., Isikbay, M., Kach, J., Brechka, H., Vander Weele, D.J., Szmulewitz, R.Z., Vander Griend, D.J. Molecular Analysis of CD133-Positive Circulating Tumor Cells from Patients with Metastatic Castration-Resistant Prostate Cancer'. Journal of Translational Science 2015 Jul;1(1). Epub 2015 Jul 30. PMID: 26753099

Brown MS, Grubb J, Zhang A, Rust MJ, Bishop DK. Small Rad51 and Dmc1 Complexes Often Co-occupy Both Ends of a Meiotic DNA Double Strand Break. PLoS Genet. 2015 Dec 31;11(12):e1005653. doi: 10.1371/journal.pgen.1005653. eCollection 2015 Dec. PMID: 26719980

Grubb J, Brown MS, Bishop DK. Surface Spreading and Immunostaining of Yeast Chromosomes.  J Vis Exp. 2015 Aug 9;(102):e53081. doi: 10.3791/53081. PMID: 26325523

Joshi N, Brown MS, Bishop DK, Börner GV. Gradual implementation of the meiotic recombination program via checkpoint pathways controlled by global DSB levels.  Mol Cell2015 Mar 5;57(5):797-811. doi: 10.1016/j.molcel.2014.12.027. Epub 2015 Feb 5. PMID: 25661491

Shi W, Scannell Bryan M, Gilbert MR, et al. Investigating the effect of reirradiation or systemic therapy in patients with gbm after tumor progression: A secondary analysis of the nrg oncology/rtog 0525.  Neuro-Oncology 2015 Nov; 17 (suppl 5):v8-v8 

McDonald BD, Bunker JJ, Erickson SA, Oh-Hora M, Bendelac A. Crossreactive αβ T Cell Receptors Are the Predominant Targets of Thymocyte Negative Selection.  Immunity. 2015 Nov 17;43(5):859-69. doi: 10.1016/j.immuni.2015.09.009. Epub 2015 Oct 27. PMID: 26522985

Bunker JJ, Flynn TM, Koval JC, Shaw DG, Meisel M, McDonald BD, Ishizuka IE, Dent AL, Wilson PC, Jabri B, Antonopoulos DA, Bendelac A. Innate and Adaptive Humoral Responses Coat Distinct Commensal Bacteria with Immunoglobulin A. Immunity. 2015 Sep 15;43(3):541-53. doi: 10.1016/j.immuni.2015.08.007. Epub 2015 Aug 25. PMID: 26320660

C. Suarez, R. Carroll, T. A. Burke, J. R. Christensen, A. J. Bestul, J. A. Sees, M. L. James, V. Sirotkin, and D. R. Kovar. Profilin regulates F-actin network homeostasis by favoring formin over Arp2/3 complex. Dev Cell. 2015 Jan 12;32(1):43-53. doi: 10.1016/j.devcel.2014.10.027. Epub 2014 Dec 24. PMID: 25543282

Bestul AJ, Christensen JR, Grzegorzewska AP, Burke TA, Sees JA, Carroll RT, Sirotkin V, Keenan RJ, Kovar DR. Fission yeast profilin is tailored to facilitate actin assembly by the cytokinesis formin Cdc12. Mol Biol Cell. 2015 Jan 15;26(2):283-93. doi: 10.1091/mbc.E13-05-0281. Epub 2014 Nov 12. PMID: 25392301

Angielczyk, K. D., Burroughs, R. W., Feldman, C. F. 2015. Do Turtles Follow Rules? Latitudinal Gradients in Species Richness, Body Size, and Geographic Range Area of the World's Turtles. Journal of Experimental Zoology Part B 324: 270-294.  

Burrows MP, Volchkov P, Kobayashi KS, Chervonsky AV. Microbiota regulates type 1 diabetes through Toll-like receptors. Proceedings of the National Academy of Sciences of the United States of America. 2015 Aug 11;112(32):9973-7. E-Pub 2015 Jul 27; pii: 201508740. PMID:26216961   

Canavan SV, Eissa TL, Schevon C, McKhann GM, Goodman RR, Emerson RG, van Drongelen W. (2015). Epileptogenic networks: applying network analysis techniques to human seizure activity.  In: Validating Neuro-Computational Models of Neurological and Psychiatric Disorders.  Eds. Basabdatta Sen-Bhattacharya, Fahmida Chowdhury. Springer.

Laukka T, Mariani CJ, Ihantola T, Cao JZ, Hokkanen J, Kaelin WG Jr, Godley LA, Koivunen P. Fumarate and Succinate Regulate Expression of Hypoxia-Inducible Genes via TET Enzymes.  J Biol Chem. 2015 Dec 23. pii: jbc.M115.688762. [Epub ahead of print] PMID: 26703470

Coleman BD, Marivin A, Parag-Sharma K, DiGiacomo V, Kim S, Pepper JS, Casler J, Nguyen LT, Koelle MR, Garcia-Marcos M. Evolutionary conservation of a GPCR-independent mechanism of trimeric G protein activation.  Mol Biol Evol. 2015 Dec 10. pii: msv336. [Epub ahead of print] PMID:  26659249

Cetera M, Horne-Badovinac S. Round and round gets you somewhere: collective cell migration and planar polarity in elongating Drosophila egg chambers. Curr Opin Genet Dev. 2015 Feb 9;32C:10-15. doi: 10.1016/j.gde.2015.01.003. [Epub ahead of print] Review. PMID: 2567793

Chambers B,  MacLean JN. (2015).  Multineuronal activity patterns identify selective synaptic connections under realistic experimental constraints.  J Neurophysiol. 2015 Sep;114(3):1837-49. doi: 10.1152/jn.00429.2015. Epub 2015 Jul 22. PMID: 26203109 

Dey M, Chang AL, Miska J, Wainwright DA, Ahmed AU, Balyasnikova IV, Pytel P, Han Y, Tobias A, Zhang L, Qiao J, Lesniak MS.  Dendritic Cell-Based Vaccines that Utilize Myeloid Rather than Plasmacytoid Cells Offer a Superior Survival Advantage in Malignant Glioma. J Immunol. 2015 Jul 1;195(1):367-76. doi: 10.4049/jimmunol.1401607. Epub 2015 May 29. PMID:  26026061

Qiao J, Dey M, Chang AL, Kim JW, Miska J, Ling A, M Nettlebeck D, Han Y, Zhang L, Lesniak MS. Intratumoral oncolytic adenoviral treatment modulates the glioma microenvironment and facilitates systemic tumor-antigen-specific T cell therapy. Oncoimmunology. 2015 Apr 2;4(8):e1022302. eCollection 2015 Aug. PMID:  26405578

Kim JW, Kane JR, Young JS, Chang AL, Kanojia D, Morshed RA, Miska J, Ahmed AU, Balyasnikova IV, Han Y, Zhang L, Curiel DT, Lesniak MS.  A Genetically Modified Adenoviral Vector with a Phage Display-Derived Peptide Incorporated into Fiber Fibritin Chimera Prolongs Survival in Experimental Glioma. Hum Gene Ther. 2015 Sep;26(9):635-46. doi: 10.1089/hum.2015.008. Epub 2015 Aug 11. PMID: 26058317

Chang AL, Miska J, Wainwright DA, Dey M, Yu D, Qiao J, Pytel P, Zhang L, Ahmed AU, Lesniak MS. Glioma microenvironment-derived CCL2 recruits regulatory T cells and myeloid-derived suppressor cells. Journal for Immunotherapy of Cancer. 2015. 3(Suppl 2):P72 DOI: 10.1186/2051-1426-3-S2-P72

Kim JW, Kane JR, Young JS, Chang AL, Kanojia D, Qian S, Spencer DA, Ahmed AU, Lesniak MS. Neural stem cell-mediated delivery of oncolytic adenovirus. Current Protocols in Human Genetics. 2015 Apr 1;85:13.11.1-9. doi: 10.1002/0471142905.hg1311s85. PMID: 25827347    

Pei Z, Chen Q, Koren D, Giammarinaro B, Acaron Ledesma H, Wei W. Conditional Knock-Out of Vesicular GABA Transporter Gene from Starburst Amacrine Cells Reveals the Contributions of Multiple Synaptic Mechanisms Underlying Direction Selectivity in the Retina.  J Neurosci2015 Sep 23;35(38):13219-32. doi: 10.1523/JNEUROSCI.0933-15.2015. PMID: 26400950

Zhao F, Cheng BL, Boyle-Vavra S, Alegre ML, Daum RS, Chong AS, Montgomery CP.  Proteomic identification of saeRS-dependent targets critical for protective humoral immunity against Staphylococcus aureus skin infection. Infect Immun. 2015 Jul 13. pii: IAI.00667-15  PMID: 26169277 

Chourasia AH, Macleod KF. Tumor suppressor functions of BNIP3 and mitophagy. Autophagy. 2015 Oct 3;11(10):1937-8. doi: 10.1080/15548627.2015.1085136. PMID: 26315353

Chourasia AH, Tracy K, Frankenberger C, Boland ML, Sharifi MN, Drake LE, Sachleben JR, Asara JM, Locasale JW, Karczmar GS, Macleod KF.  Mitophagy defects arising from BNip3 loss promote mammary tumor progression to metastasis. EMBO Rep. 2015 Sep;16(9):1145-63. doi: 10.15252/embr.201540759. Epub 2015 Jul 31. PMID: 26232272

Chourasia AH, Boland ML, Macleod KF. Mitophagy and cancer. Cancer Metab. 2015 Mar 26;3:4. doi: 10.1186/s40170-015-0130-8. eCollection 2015. PMID: 25810907

Bestul AJ, Christensen JR, Grzegorzewska AP, Burke TA, Sees JA, Carroll RT, Sirotkin V, Keenan RJ, Kovar DR. Fission yeast profilin is tailored to facilitate actin assembly by the cytokinesis formin Cdc12. Mol Biol Cell. 2015 Jan 15;26(2):283-93. doi: 10.1091/mbc.E13-05-0281. Epub 2014 Nov 12. PMID: 25392301

C. Suarez, R. Carroll, T. A. Burke, J. R. Christensen, A. J. Bestul, J. A. Sees, M. L. James, V. Sirotkin, and D. R. Kovar. Profilin regulates F-actin network homeostasis by favoring formin over Arp2/3 complex. Dev Cell. 2015 Jan 12;32(1):43-53. doi: 10.1016/j.devcel.2014.10.027. Epub 2014 Dec 24. PMID: 25543282

Clark MD, Marcum R, Graveline R, Chan CW, Xie T, Chen Z, Ding Y, Zhang Y, Mondragón A, David G, Radhakrishnan I. Structural insights into the assembly of the histone deacetylase-associated Sin3L/Rpd3L corepressor complex. Proc Natl Acad Sci U S A. 2015 Jul 14;112(28):E3669-78. PMID: 26124119.

Zheng G, Qin Y, Clark WC, Dai Q, Yi C, He C, Lambowitz AM, Pan T. Efficient and quantitative high-throughput tRNA sequencing. Nat Methods. 2015 Sep;12(9):835-7. doi: 10.1038/nmeth.3478. Epub 2015 Jul 27.  PMID: 26214130

Katharine E. Criswell. The comparative osteology and phylogenetic relationships of African and South American lungfishes (Sarcopterygii: Dipnoi). Zoological Journal of the Linnean Society. Article first published online : 27 MAR 2015, DOI: 10.1111/zoj.12255

Liu X, Pu Y, Cron K, Deng L, Kline J, Frazier WA, Xu H, Peng H, Fu YX, Xu MM.  CD47 blockade triggers T cell-mediated destruction of immunogenic tumors. Nat Med. 2015 Oct;21(10):1209-15. doi: 10.1038/nm.3931. Epub 2015 Aug 31. PMID: 26322579

A Cunliffe, S Armato, R Castillo, N Pham, T Guerrero, and H Al-Hallaq, 'Lung texture in serial thoracic CT scans: Correlation with radiation dose and radiation pneumonitis development,' Int J Radiat Oncol Biol Phys. 2015 Feb 7. pii: S0360-3016(14)04439-3. doi: 10.1016/j.ijrobp.2014.11.030. [Epub ahead of print]PMID: 25670540

A Cunliffe, C Contee, S Armato, B White, J Justusson, R Malik, and H Al-Hallaq, 'Effect of deformable registration on the dose calculated in radiation therapy planning CT scans of lung cancer patients,' Med Phys. 2015 Jan;42(1):391-9. doi: 10.1118/1.4903267. PMID: 25563279

Dahlberg PD, Norris GJ, Wang C, Viswanathan S, Singh VP, Engel GS.  Communication: Coherences observed in vivo in photosynthetic bacteria using two-dimensional electronic spectroscopy. J Chem Phys. 2015 Sep 14;143(10):101101. doi: 10.1063/1.4930539. PMID: 26373989

Singh VP, Westberg M, Wang C, Dahlberg PD, Gellen T, Gardiner AT, Cogdell RJ, Engel GS.  Towards quantification of vibronic coupling in photosynthetic antenna complexes. J Chem Phys. 2015 Jun 7;142(21):212446. doi: 10.1063/1.4921324. PMID: 26049466

She C, Fedin I, Dolzhnikov DS, Dahlberg PD, Engel GS, Schaller RD, Talapin DV.  Red, Yellow, Green, and Blue Amplified Spontaneous Emission and Lasing Using Colloidal CdSe Nanoplatelets. ACS Nano. 2015 Oct 27;9(10):9475-85. doi: 10.1021/acsnano.5b02509. Epub 2015 Sep 9. PMID: 26302368

Soltau SR, Niklas J, Dahlberg PD, Poluektov OG, Tiede DM, Mulfort KL, Utschig LM.  Aqueous light driven hydrogen production by a Ru-ferredoxin-Co biohybrid.  Chem Commun (Camb). 2015 Jul 7;51(53):10628-31. doi: 10.1039/c5cc03006d. PMID: 26051070

Flanagan ML, Long PD, Dahlberg PD, Rolczynski BS, Massey SC, Engel GS.  Mutations to R. sphaeroides Reaction Center Perturb Energy Levels and Vibronic Coupling but Not Observed Energy Transfer Rates.  J Phys Chem A. 2015 Dec 16. [Epub ahead of print] PMID: 26630123

Papanikou E, Day KJ, Austin J, Glick BS.  COPI selectively drives maturation of the early Golgi.  Elife. 2015 Dec 28;4. pii: e13232. doi: 10.7554/eLife.13232. [Epub ahead of print] PMID: 26709839

Chourasia AH, Tracy K, Frankenberger C, Boland ML, Sharifi MN, Drake LE, Sachleben JR, Asara JM, Locasale JW, Karczmar GS, Macleod KF.  Mitophagy defects arising from BNip3 loss promote mammary tumor progression to metastasis. EMBO Rep. 2015 Sep;16(9):1145-63. doi: 10.15252/embr.201540759. Epub 2015 Jul 31. PMID: 26232272

Sharifi MN, Mowers EE, Drake LE, Macleod KF. Measuring autophagy in stressed cells. Methods Mol Biol. 2015;1292:129-50. doi: 10.1007/978-1-4939-2522-3_10. PMID: 25804753

Sivan A, Corrales L, Hubert N, Williams JB, Aquino-Michaels K, Earley ZM, Benyamin FW, Lei YM, Jabri B, Alegre ML, Chang EB, Gajewski TF. Commensal Bifidobacterium promotes antitumor immunity and facilitates anti-PD-L1 efficacy.  Science. 2015 Nov 27;350(6264):1084-9. doi: 10.1126/science.aac4255. Epub 2015 Nov 5. PMID: 26541606

Kim H, Chen CT, Eclov N, Ronzhin A, Murat P, Ramberg E, Los S, Wyrwicz AM, Li L, Kao CM. A feasibility study of a PET/MRI insert detector using strip-line and waveform sampling data acquisition.  Nucl Instrum Methods Phys Res A. 2015 Jun 1;784:557-564. PMID: 25937685

Meijer HGE, Eissa TL, Kiewiet B,  Neuman JF, Schevon CA, Emerson RG, Goodman RR, McKhann GM Jr, Marcuccilli CJ, Tryba AK, Cowan JD, van Gils SA, van Drongelen W. 'Modeling Focal Epileptic Activity in the Wilson-Cowan model with Depolarization Block.' J. Math. Neurosci. (2015) Mar 27;5:7. doi: 10.1186/s13408-015-0019-4. eCollection 2015. PMCID: PMC4385301

Canavan SV, Eissa TL, Schevon C, McKhann GM, Goodman RR, Emerson RG, van Drongelen W. (2015). Epileptogenic networks: applying network analysis techniques to human seizure activity.  In: Validating Neuro-Computational Models of Neurological and Psychiatric Disorders.  Eds. Basabdatta Sen-Bhattacharya, Fahmida Chowdhury. Springer.

Piochon C, Kloth AD, Grasselli G, Titley HK, Nakayama H, Hashimoto K, Wan V, Simmons DH, Eissa T, Nakatani J, Cherskov A, Miyazaki T, Watanabe M, Takumi T, Kano M, Wang SS, Hansel C. Corrigendum: Cerebellar plasticity and motor learning deficits in a copy-number variation mouse model of autism. Nat Commun. 2015 Jan 27;6:6014. doi: 10.1038/ncomms7014. No abstract available. MID: 25625889

Krishnamoorthy V, Carr T, de Pooter RF, Emanuelle AO, Gounari F, Kee BL. Repression of Ccr9 transcription in mouse T lymphocyte progenitors by the Notch signaling pathway.  J Immunol2015 Apr 1;194(7):3191-200. doi: 10.4049/jimmunol.1402443. Epub 2015 Feb 20. Erratum in: J Immunol. 2015 Jun 15;194(12):6191. Akinola, Emmanuel Olumide [Corrected to Emanuelle, Akinola Olumide].

McDonald BD, Bunker JJ, Erickson SA, Oh-Hora M, Bendelac A. Crossreactive αβ T Cell Receptors Are the Predominant Targets of Thymocyte Negative Selection.  Immunity. 2015 Nov 17;43(5):859-69. doi: 10.1016/j.immuni.2015.09.009. Epub 2015 Oct 27. PMID: 26522985

Feehley T, Nagler CR. Cellular and molecular pathways through which commensal bacteria modulate sensitization to dietary antigens.  Curr Opin Immunol. 2014 Dec;31:79-86. doi: 10.1016/j.coi.2014.10.001. Epub 2014 Oct 22. Review.  PMID: 25458998

Flanagan ML, Long PD, Dahlberg PD, Rolczynski BS, Massey SC, Engel GS. Mutations to R. sphaeroides Reaction Center Perturb Energy Levels and Vibronic Coupling but Not Observed Energy Transfer Rates.  J Phys Chem A. 2015 Dec 16. [Epub ahead of print] PMID: 26630123

Fosque BF, Sun Y, Dana H, Yang CT, Ohyama T, Tadross MR, Patel R, Zlatic M, Kim DS, Ahrens MB, Jayaraman V, Looger LL, Schreiter ER.  Neural circuits. Labeling of active neural circuits in vivo with designed calcium integrators. Science. 2015 Feb 13;347(6223):755-60. doi: 10.1126/science.1260922. PMID: 25678659

Sharanya D, Fillis CJ, Kim J, Zitnik EM Jr, Ward KA, Gallagher ME, Chamberlin HM, Gupta BP.  Mutations in Caenorhabditis briggsae identify new genes important for limiting the response to EGF signaling during vulval development.  Evol Dev. 2015 Jan-Feb;17(1):34-48. doi: 10.1111/ede.12105. PMID: 25627712

Gao QQ, McNally EM. The Dystrophin Complex: Structure, Function, and Implications for Therapy. Compr Physiol. 2015 Jul 1;5(3):1223-39. doi: 10.1002/cphy.c140048. PMID: 26140716

Gebhardt MJ, Gallagher LA, Jacobson RK, Usacheva EA, Peterson LR, Zurawski DV, Shuman HA.  Joint Transcriptional Control of Virulence and Resistance to Antibiotic and Environmental Stress in Acinetobacter baumannii. MBio. 2015 Nov 10;6(6). pii: e01660-15. doi: 10.1128/mBio.01660-15. PMID: 26556274

Nakamura T, Klomp J, Pieretti J, Schneider I, Gehrke AR, Shubin NH. Molecular mechanisms underlying the exceptional adaptations of batoid fins. Proc Natl Acad Sci U S A. 2015 Dec 29;112(52):15940-5. doi: 10.1073/pnas.1521818112. Epub 2015 Dec 7. PMID: 26644578

Gehrke AR, Schneider I, de la Calle-Mustienes E, Tena JJ, Gomez-Marin C, Chandran M, Nakamura T, Braasch I, Postlethwait JH, Gómez-Skarmeta JL, Shubin NH. Deep conservation of wrist and digit enhancers in fish. Proc Natl Acad Sci U S A. 2015 Jan 20;112(3):803-8. doi: 10.1073/pnas.1420208112. Epub 2014 Dec 22. PMID: 25535365

Pieretti J, Gehrke AR, Schneider I, Adachi N, Nakamura T, Shubin NH. Organogenesis in deep time: A problem in genomics, development, and paleontology. Proc Natl Acad Sci U S A. 2015 Apr 21;112(16):4871-6. doi: 10.1073/pnas.1403665112. PMID: 25901307

McElroy E, George  A, and de Buron I. (2015). The muscle dwelling myxozoan, Kudoa inornata, enhances swimming performance in the spotted seatrout, Cynoscion nebulosus.  Parasitology Research. 114 (7): 2451-2457. PMID: 25876046

Gibbons SM, Schwartz T, Fouquier J, Mitchell M, Sangwan N, Gilbert JA, Kelley ST. Ecological succession and viability of human-associated microbiota on restroom surfaces. Appl Environ Microbiol. 2015 Jan; 81(2):765-73. doi: 10.1128/AEM.03117-14. Epub 2014 Nov 14. PMID: 25398865

Vitaglione P, Mennella I, Ferracane R, Rivellese AA, Giacco R, Ercolini D, Gibbons SM, La Storia A, Gilbert JA, Jonnalagadda S, Thielecke F, Gallo MA, Scalfi L, Fogliano V. Whole-grain wheat consumption reduces inflammation in a randomized controlled trial on overweight and obese subjects with unhealthy dietary and lifestyle behaviors: role of polyphenols bound to cereal dietary fiber. Am J Clin Nutr. 2015 Feb;101(2):251-61. doi: 10.3945/ajcn.114.088120. Epub 2014 Dec 3. PMID:25646321

McElroy E, George  A, and de Buron I. (2015). The muscle dwelling myxozoan, Kudoa inornata, enhances swimming performance in the spotted seatrout, Cynoscion nebulosus.  Parasitology Research. 114 (7): 2451-2457. PMID: 25876046

Meng QJ, Ji Q, Zhang YG, Liu D, Grossnickle DM, Luo ZX.  Mammalian evolution. An arboreal docodont from the Jurassic and mammaliaform ecological diversification.  Science. 2015 Feb 13;347(6223):764-8. doi: 10.1126/science.1260879. PMID: 25678661

Grzybowski AT, Chen Z, Ruthenburg AJ .  Calibrating ChIP-Seq with Nucleosomal Internal Standards to Measure Histone Modification Density Genome Wide. Mol Cell. 2015 Jun 4;58(5):886-99. doi: 10.1016/j.molcel.2015.04.022. Epub 2015 May 21. PMID: 26004229

Rothbart SB, Dickson BM, Raab JR, Grzybowski AT, Krajewski K, Guo AH, Shanle EK, Josefowicz SZ, Fuchs SM, Allis CD, Magnuson TR, Ruthenburg AJ, Strahl BD.  An Interactive Database for the Assessment of Histone Antibody Specificity.  Mol Cell. 2015 Aug 6;59(3):502-11. doi: 10.1016/j.molcel.2015.06.022. Epub 2015 Jul 23. PMID: 26212453

Gu S, Nawrocka W, Adams EJ. Sensing of Pyrophosphate Metabolites by Vγ9Vδ2 T Cells. Front Immunol. 2015 Jan 22;5:688. doi: 10.3389/fimmu.2014.00688. eCollection 2014. Review.  PMID:  25657647

Adams EJ, Gu S, Luoma AM. Human gamma delta T cells: Evolution and ligand recognition. Cell Immunol. 2015 Jul;296(1):31-40. doi: 10.1016/j.cellimm.2015.04.008. Epub 2015 May 6. Review.  PMID: 25991474

Constantinides MG, Gudjonson H, McDonald BD, Ishizuka IE, Verhoef PA, Dinner AR, Bendelac A. PLZF expression maps the early stages of ILC1 lineage development.  Proc Natl Acad Sci U S A2015 Apr 21;112(16):5123-8. doi: 10.1073/pnas.1423244112. Epub 2015 Apr 2. PMID: 25838284

Peláez N, Gavalda-Miralles A, Wang B, Navarro HT, Gudjonson H, Rebay I, Dinner AR, Katsaggelos AK, Amaral LA, Carthew RW.  Dynamics and heterogeneity of a fate determinant during transition towards cell differentiation.  Elife. 2015 Nov 19;4. pii: e08924. doi: 10.7554/eLife.08924. [Epub ahead of print]  PMID: 26583752

Hutchison AL, Maienschein-Cline M, Chiang AH, Tabei SM, Gudjonson H, Bahroos N, Allada R, Dinner AR. Improved statistical methods enable greater sensitivity in rhythm detection for genome-wide data.  PLoS Comput Biol. 2015 Mar 20;11(3):e1004094. doi: 10.1371/journal.pcbi.1004094. eCollection 2015 Mar. PMID: 25793520

Waldrop LD, Hann M, Henry AK, Kim A, Punjabi A, Koehl MA. Ontogenetic changes in the olfactory antennules of the shore crab, Hemigrapsus oregonensis, maintain sniffing function during growth. J R Soc Interface. 2015 Jan 6;12(102):20141077. doi: 10.1098/rsif.2014.1077. PMID: 25411408

Daniel M. Hooper and Trevor D. Price. Rates of karyotypic evolution in Estrildid finches differ between island and continental clades. Evolution. Volume 69, Issue 4, pages 890–903, April 2015. Article first published online: 10 APR 2015 DOI: 10.1111/evo.12633

Singhal S, Leffler EM, Sannareddy K, Turner I, Venn O, Hooper DM, Strand AI, Li Q, Raney B, Balakrishnan CN, Griffith SC, McVean G, Przeworski M. Stable recombination hotspots in birds. Science. 2015 Nov 20;350(6263):928-32. doi: 10.1126/science.aad0843. PMID: 26586757

Toews DP, Campagna L, Taylor SA, Balakrishnan CN, Baldassarre DT, Deane-Coe PE, Harvey MG, Hooper DM, Irwin DE, Judy CD, and Mason NA, 2015. Genomic approaches to understanding population divergence and speciation in birdsThe Auk133(1), pp.13-30.

Hsu PJ, Shou H, Benzinger T, Marcus D, Durbin T, Morris JC, Sheline YI. Amyloid Burden in Cognitively Normal Elderly is Associated with Preferential Hippocampal Subfield Volume Loss. J Alzheimers Dis. 2015 Jan 1;45(1):27-33. doi: 10.3233/JAD-141743.

Gordon BA, Najmi S, Hsu P, Roe CM, Morris JC, Benzinger TL. The effects of white matter hyperintensities and amyloid deposition on Alzheimer dementia. Neuroimage Clin. 2015 Apr 30;8:246-52. doi: 10.1016/j.nicl.2015.04.017. eCollection 2015.PMID: 26106548

Hulur I, Gamazon ER, Skol AD, Xicola RM, Llor X, Onel K, Ellis NA, Kupfer SS: Enrichment of inflammatory bowel disease and colorectal cancer risk variants in colon expression quantitative trait loci. BMC Genomics 2015, 16(1):138. doi:10.1186/s12864-015-1292-z.

Lesko AC, Goss KH, Yang FF, Schwertner A, Hulur I, Onel K, Prosperi JR: The APC tumor suppressor is required for epithelial cell polarization and three-dimensional morphogenesis. Biochimica et biophysica acta 2015, 1854(3):711-723

Rapp M, Schein J, Hunt KA, Nalam V, Mourad GS, Schultes NP. The solute specificity profiles of nucleobase cation symporter 1 (NCS1) from Zea mays and Setaria viridis illustrate functional flexibility. Protoplasma. 2015 May 29. [Epub ahead of print] PMID: 26022088

Hutchison AL, Maienschein-Cline M, Chiang AH, Tabei SM, Gudjonson H, Bahroos N, Allada R, Dinner AR. Improved statistical methods enable greater sensitivity in rhythm detection for genome-wide data. PLoS Comput Biol. 2015 Mar 20;11(3):e1004094. doi: 10.1371/journal.pcbi.1004094. eCollection 2015 Mar. PMID: 25793520

Perelis M, Marcheva B, Ramsey KM, Schipma MJ, Hutchison AL, Taguchi A, Peek CB, Hong H, Huang W, Omura C, Allred AL, Bradfield CA, Dinner AR, Barish GD, Bass J.  Pancreatic β cell enhancers regulate rhythmic transcription of genes controlling insulin secretion.  Science. 2015 Nov 6;350(6261):aac4250. doi: 10.1126/science.aac4250.  PMID: 26542580

Flourakis M, Kula-Eversole E, Hutchison AL, Han TH, Aranda K, Moose DL, White KP, Dinner AR, Lear BC, Ren D, Diekman CO, Raman IM, Allada R.  A Conserved Bicycle Model for Circadian Clock Control of Membrane Excitability. Cell. 2015 Aug 13;162(4):836-48. doi: 10.1016/j.cell.2015.07.036. PMID: 26276633

Leone V, Gibbons SM, Martinez K, Hutchison AL, Huang EY, Cham CM, Pierre JF, Heneghan AF, Nadimpalli A, Hubert N, Zale E, Wang Y, Huang Y, Theriault B, Dinner AR, Musch MW, Kudsk KA, Prendergast BJ, Gilbert JA, Chang EB. Effects of diurnal variation of gut microbes and high-fat feeding on host circadian clock function and metabolism. Cell Host Microbe. 2015 May 13;17(5):681-9. doi: 10.1016/j.chom.2015.03.006. Epub 2015 Apr 16. PMID: 25891358

Igartua C , Myers RA, Mathias RA, Pino-Yanes M, Eng C, Graves PE, Levin AM, Del-Rio-Navarro BE, Jackson DJ, Livne OE, Rafaels N, Edlund CK, Yang JJ, Huntsman S, Salam MT, Romieu I, Mourad R, Gern JE, Lemanske RF, Wyss A, Hoppin JA, Barnes KC, Burchard EG, Gauderman WJ, Martinez FD, Raby BA, Weiss ST, Williams LK, London SJ, Gilliland FD, Nicolae DL, Ober C. Ethnic-specific associations of rare and low-frequency DNA sequence variants with asthma. Nat Commun. 2015 Jan 16;6:5965. doi: 10.1038/ncomms6965. PMID: 2559145

Kim KW, Myers RA, Lee JH, Igartua C, Lee KE, Kim YH, Kim EJ, Yoon D, Lee JS, Hirota T, Tamari M, Takahashi A, Kubo M, Choi JM, Kim KE, Nicolae DL, Ober C, Sohn MH. Genome-wide association study of recalcitrant atopic dermatitis in Korean children. J Allergy Clin Immunol. 2015 Sep;136(3):678-684.e4. doi: 10.1016/j.jaci.2015.03.030. Epub 2015 Apr 30. PMID: 25935106

Isabella AJ, Horne-Badovinac S. Building from the Ground up: Basement Membranes in Drosophila Development.  Curr Top Membr. 2015;76:305-36. doi: 10.1016/bs.ctm.2015.07.001. Epub 2015 Jul 30. PMID: 26610918

Isabella AJ, Horne-Badovinac S. Dynamic regulation of basement membrane protein levels promotes egg chamber elongation in Drosophila. Dev Biol. 2015 Oct 15;406(2):212-21. doi: 10.1016/j.ydbio.2015.08.018. Epub 2015 Sep 6. PMID: 26348027

Bunker JJ, Flynn TM, Koval JC, Shaw DG, Meisel M, McDonald BD, Ishizuka IE, Dent AL, Wilson PC, Jabri B, Antonopoulos DA, Bendelac A. Innate and Adaptive Humoral Responses Coat Distinct Commensal Bacteria with Immunoglobulin A. Immunity. 2015 Sep 15;43(3):541-53. doi: 10.1016/j.immuni.2015.08.007. Epub 2015 Aug 25. PMID: 26320660

Constantinides MG, Gudjonson H, McDonald BD, Ishizuka IE, Verhoef PA, Dinner AR, Bendelac A. PLZF expression maps the early stages of ILC1 lineage development.  Proc Natl Acad Sci U S A. 2015 Apr 21;112(16):5123-8. doi: 10.1073/pnas.1423244112. Epub 2015 Apr 2. PMID: 25838284

Jackrel SL, Wootton JT.  Diversity of Riparian Plants among and within Species Shapes River Communities.  PLoS One. 2015 Nov 5;10(11):e0142362. doi: 10.1371/journal.pone.0142362. eCollection 2015. PMID: 26539714

Jackrel, S.L. and J.T. Wootton.  Cascading effects of induced terrestrial plant defences on aquatic ecosystem function. Proceedings of the Royal Society B 2015. 282: 20142522.

Jeong C, Nakagome S, Di Rienzo A.Deep History of East Asian Populations Revealed Through Genetic Analysis of the Ainu. Genetics. 2015 Oct 23. pii: genetics.115.178673. [Epub ahead of print] PMID: 26500257

Jiang P, Ludwig MZ, Kreitman M, Reinitz J.  Natural variation of the expression pattern of the segmentation gene even-skipped in melanogaster.  Dev Biol. 2015 Sep 1;405(1):173-81. doi: 10.1016/j.ydbio.2015.06.019. Epub 2015 Jun 27. PMID: 26129990

Kagan CL, Banovich NE, Pavlovic BJ, Patterson K, Gallego Romero I, Pritchard JK, and Gilad Y. Genetic Variation, Not Cell Type of Origin, Underlies Regulatory Differences in iPSCs. bioRxiv. 2015 Jan: http://dx.doi.org/10.1101/013888

Thomas SM, Kagan C, Pavlovic BJ, Burnett J, Patterson K, Pritchard JK, Gilad Y.  Reprogramming LCLs to iPSCs Results in Recovery of Donor-Specific Gene Expression Signature.  PLoS Genet. 2015 May 7;11(5):e1005216. doi: 10.1371/journal.pgen.1005216. eCollection 2015 May. PMID: 25950834

Gallego Romero I, Pavlovic BJ, Hernando-Herraez I, Zhou X, Ward MC, Banovich NE, Kagan CL, Burnett JE, Huang CH, Mitrano A, Chavarria CI, Friedrich Ben-Nun I, Li Y, Sabatini K, Leonardo TR, Parast M, Marques-Bonet T, Laurent LC, Loring JF, Gilad Y.  A panel of induced pluripotent stem cells from chimpanzees: a resource for comparative functional genomics.  Elife. 2015 Jun 23;4. doi: 10.7554/eLife.07103.

Kariuki SN, Ghodke-Puranik Y, Dorschner JM, Chrabot BS, Kelly JA, Tsao BP, Kimberly RP, Alarcón-Riquelme ME, Jacob CO, Criswell LA, Sivils KL, Langefeld CD, Harley JB, Skol AD, Niewold TB. Genetic analysis of the pathogenic molecular sub-phenotype interferon-alpha identifies multiple novel loci involved in systemic lupus erythematosus. Genes Immun. 2015 Jan;16(1):15-23. doi: 10.1038/gene.2014.57. Epub 2014 Oct 23. PMID: 25338677

Dunand CJ, Leon PE, Kaur K , Tan GS, Zheng NY, Andrews S, Huang M, Qu X, Huang Y, Salgado-Ferrer M, Ho IY, Taylor W, Hai R, Wrammert J, Ahmed R, García-Sastre A, Palese P, Krammer F, Wilson PC. Preexisting human antibodies neutralize recently emerged H7N9 influenza strains. J Clin Invest. 2015 Mar 2;125(3):1255-68. doi: 10.1172/JCI74374. Epub 2015 Feb 17. PMID: 25689254

Andrews SF, Kaur K, Pauli NT, Huang M, Huang Y, Wilson PC. High preexisting serological antibody levels correlate with diversification of the influenza vaccine response. J Virol. 2015 Mar 15;89(6):3308-17. doi: 10.1128/JVI.02871-14. Epub 2015 Jan 14. PMID: 25589639

Kim SM, Mayassi T, Jabri B. Innate immunity: actuating the gears of celiac disease pathogenesis. Best Pract Res Clin Gastroenterol. 2015 Jun;29(3):425-35. doi: 10.1016/j.bpg.2015.05.001. Epub 2015 May 11. Review.  PMID: 26060107

Zaborin A, Defazio JR, Kade M, Kaiser BL, Belogortseva N, Camp DG 2nd, Smith RD, Adkins JN, Kim SM, Alverdy A, Goldfeld D, Firestone MA, Collier JH, Jabri B, Tirrell M, Zaborina O, Alverdy JC.  Phosphate-containing polyethylene glycol polymers prevent lethal sepsis by multidrug-resistant pathogens. Antimicrob Agents Chemother. 2014;58(2):966-77. doi: 10.1128/AAC.02183-13. Epub 2013 Nov 25. PMID: 24277029

Regnier SM, Kirkley AG, Ye H, El-Hashani E, Zhang X, Neel BA, Kamau W, Thomas CC, Williams AK, Hayes ET, Massad NL, Johnson DN, Huang L, Zhang C, Sargis RM. Dietary exposure to the endocrine disruptor tolylfluanid promotes global metabolic dysfunction in male mice. Endocrinology. 2015 Mar;156(3):896-910. doi: 10.1210/en.2014-1668. Epub 2014 Dec 23. PMID: 25535829

Oh EY, Christensen SM, Ghanta S, Jeong JC, Bucur O, Glass B, Montaser-Kouhsari L, Knoblauch NW, Bertos N, Saleh SM, Haibe-Kains B, Park M, Beck AH.  Extensive rewiring of epithelial-stromal co-expression networks in breast cancer.  Genome Biol. 2015 Jun 19;16:128. doi: 10.1186/s13059-015-0675-4. PMID: 26087699

Montaser-Kouhsari L, Knoblauch NW, Oh EY, Baker G, Christensen S, Hazra A, Tamimi RM, Beck AH.  Image-guided Coring for Large-scale Studies in Molecular Pathology.  Appl Immunohistochem Mol Morphol. 2015 Jul 16. [Epub ahead of print] PMID: 26186251

Lindström S, Thompson DJ, Paterson AD, Li J, Gierach GL, Scott C, Stone J, Douglas JA, Dos-Santos-Silva I, Fernandez-Navarro P, Verghase J, Smith P, Brown J, Luben R, Wareham NJ, Loos RJ, Heit JA, Pankratz VS, Norman A, Goode EL, Cunningham JM, deAndrade M, Vierkant RA, Czene K, Fasching PA, Baglietto L, Southey MC, Giles GG, Shah KP, Chan HP, Helvie MA, Beck AH, Knoblauch NW, Hazra A, Hunter DJ, Kraft P, Pollan M, Figueroa JD, Couch FJ, Hopper JL, Hall P, Easton DF, Boyd NF, Vachon CM, Tamimi RM. Corrigendum: Genome-wide association study identifies multiple loci associated with both mammographic density and breast cancer risk.  Nat Commun. 2015 Sep 9;6:8358. doi: 10.1038/ncomms9358. No abstract available. PMID:26349435

Surcel A, Ng WP, West-Foyle H, Zhu Q, Ren Y, Avery LB, Krenc AK, Meyers DJ, Rock RS, Anders RA, Freel Meyers CL, Robinson DN.  Pharmacological activation of myosin II paralogs to correct cell mechanics defects.  Proc Natl Acad Sci U S A. 2015 Feb 3;112(5):1428-33.  PMCID: PMC4321244

Klomp J, Athy D, Kwan CW, Bloch NI, Sandmann T, Lemke S, Schmidt-Ott U.  Embryo development. A cysteine-clamp gene drives embryo polarity in the midge Chironomus.  Science. 2015 May 29;348(6238):1040-2. doi: 10.1126/science.aaa7105. Epub 2015 May 7. PMID: 25953821

Akimova OA, Tverskoi AM, Smolyaninova LV, Mongin AA, Lopina OD, La J, Dulin NO, Orlov SN. Critical role of the α1-Na(+), K(+)-ATPase subunit in insensitivity of rodent cells to cytotoxic action of ouabain.  Apoptosis. 2015 Sep;20(9):1200-10. doi: 10.1007/s10495-015-1144-y. PMID: 26067145

Lamar KM and McNally EM. Genetic Modifiers for Neuromuscular Diseases. Journal of Neuromuscular Diseases. 2014; 1:3-13. PMID: 25729645

Lax S, Hampton-Marcell JT, Gibbons SM, Colares GB, Smith D, Eisen JA, Gilbert JA. Forensic analysis of the microbiome of phones and shoes. Microbiome. 2015 May 12;3:21. doi: 10.1186/s40168-015-0082-9. eCollection 2015. PMID: 25969737

Lax S, Gilbert JA.  Hospital-associated microbiota and implications for nosocomial infections. Trends Mol Med. 2015 Jul;21(7):427-32. doi: 10.1016/j.molmed.2015.03.005. Epub 2015 Apr 20. Review. PMID: 25907678

Metcalf JL, Xu ZZ, Weiss S, Lax S, Van Treuren W, Hyde ER, Song SJ, Amir A, Larsen P, Sangwan N, Haarmann D, Humphrey GC, Ackermann G, Thompson LR, Lauber C, Bibat A, Nicholas C, Gebert MJ, Petrosino JF, Reed SC, Gilbert JA, Lynne AM, Bucheli SR, Carter DO, Knight R.  Microbial community assembly and metabolic function during mammalian corpse decomposition.  Science. 2015 Dec 10. pii: aad2646. [Epub ahead of print] PMID: 26657285

Ying S, Zeng DN, Chi L, Tan Y, Galzote C, Cardona C, Lax S, Gilbert J, Quan ZX.  The Influence of Age and Gender on Skin-Associated Microbial Communities in Urban and Rural Human Populations.   PLoS One. 2015 Oct 28;10(10):e0141842. doi: 10.1371/journal.pone.0141842. eCollection 2015. PMID: 26510185

Wood M, Gibbons SM, Lax S, Eshoo-Anton TW, Owens SM, Kennedy S, Gilbert JA, Hampton-Marcell JT. Athletic equipment microbiota are shaped by interactions with human skin. Microbiome. 2015 Jun 19;3:25. doi: 10.1186/s40168-015-0088-3. eCollection 2015. PMID: 26113975

Shogan BD, Belogortseva N, Luong PM, Zaborin A, Lax S, Bethel C, Ward M, Muldoon JP, Singer M, An G, Umanskiy K, Konda V, Shakhsheer B, Luo J, Klabbers R, Hancock LE, Gilbert J, Zaborina O, Alverdy JC.  Collagen degradation and MMP9 activation by Enterococcus faecalis contribute to intestinal anastomotic leak.  Sci Transl Med. 2015 May 6;7(286):286ra68. doi: 10.1126/scitranslmed.3010658. PMID: 25947163

Zarraonaindia I, Owens SM, Weisenhorn P, West K, Hampton-Marcell J, Lax S, Bokulich NA, Mills DA, Martin G, Taghavi S, van der Lelie D, Gilbert JA. The soil microbiome influences grapevine-associated microbiota. MBio. 2015 Mar 24;6(2). pii: e02527-14. doi: 10.1128/mBio.02527-14. PMID:25805735

Lax, Simon, Cathryn R. Nagler, and Jack A. Gilbert. Our interface with the built environment: immunity and the indoor microbiota. Trends in Immunology 2015; 36, no. 3: 121-123.  PMID: 25754179  

Lee U, Skinner JJ, Reinitz J, Rosner MR, Kim E-J (2015) Noise-Driven Phenotypic Heterogeneity with Finite Correlation Time in Clonal Populations. PLoS ONE 2015 Jul 23; 10(7): e0132397. doi:10.1371/journal.pone.0132397 (PMID: 26203903)    

Sivan A, Corrales L, Hubert N, Williams JB, Aquino-Michaels K, Earley ZM, Benyamin FW, Lei YM, Jabri B, Alegre ML, Chang EB, Gajewski TF. Commensal Bifidobacterium promotes antitumor immunity and facilitates anti-PD-L1 efficacy.  Science. 2015 Nov 27;350(6264):1084-9. doi: 10.1126/science.aac4255. Epub 2015 Nov 5. PMID: 26541606

Lenneman BR and Rothman-Denes LB.  Structural and Biochemical Investigation of Bacteriophage N4-encoded RNA Polymerases.  Biomolecules. 2015, 5, 647-667. PMCID: PMC4496689

Bae B, Chen J, Davis E, Leon K, Darst SA, Campbell EA. CarD uses a minor groove wedge mechanism to stabilize the RNA polymerase open promoter complex. Elife. 2015 Sep 8;4. doi: 10.7554/eLife.08505. PMID: 26349034

Sailer A, Anneken A, Li Y, Lee S, Munro E.  Dynamic Opposition of Clustered Proteins Stabilizes Cortical Polarity in the C. elegans Zygote.   Dev Cell. 2015 Oct 12;35(1):131-42. doi: 10.1016/j.devcel.2015.09.006. PMID: 26460948

Chang YG, Cohen SE, Phong C, Myers WK, Kim YI, Tseng R, Lin J, Zhang L, Boyd JS, Lee Y, Kang S, Lee D, Li S, Britt RD, Rust MJ, Golden SS, LiWang A.  Circadian rhythms. A protein fold switch joins the circadian oscillator to clock output in cyanobacteria.  Science. 2015 Jul 17;349(6245):324-8. doi: 10.1126/science.1260031. Epub 2015 Jun 25. PMID: 26113641

Lingaraju A, Long TM, Wang Y, Austin JR 2nd, Turner JR. Conceptual barriers to understanding physical barriers.Semin Cell Dev Biol2015 Jun;42:13-21. doi: 10.1016/j.semcdb.2015.04.008. Epub 2015 May 21. Review. PMID: 26003050

Edelblum KL, Singh G, Odenwald MA, Lingaraju A, El Bissati K, McLeod R, Sperling AI, Turner JR. γδ Intraepithelial Lymphocyte Migration Limits Transepithelial Pathogen Invasion and Systemic Disease in Mice. Gastroenterology. 2015 Mar 3. pii: S0016-5085(15)00302-9. doi: 10.1053/j.gastro.2015.02.053 PMID: 25747597

Liszewski Zilla M, Lunderberg JM, Schneewind O, Missiakas D. Bacillus anthracis lcp Genes Support Vegetative Growth, Envelope Assembly, and Spore Formation.  J Bacteriol. 2015 Dec 1;197(23):3731-41. doi: 10.1128/JB.00656-15. Epub 2015 Sep 21. PMID: 26391207

Liszewski Zilla M, Chan YG, Lunderberg JM, Schneewind O, Missiakas D. LytR-CpsA-Psr enzymes as determinants of Bacillus anthracis secondary cell wall polysaccharide assembly. J Bacteriol. 2015 Jan;197(2):343-53. doi: 10.1128/JB.02364-14. Epub 2014 Nov 10. PMID: 25384480

Lunderberg JM, Liszewski Zilla M, Missiakas D, Schneewind O.  Bacillus anthracis tagO Is Required for Vegetative Growth and Secondary Cell Wall Polysaccharide Synthesis. J Bacteriol. 2015 Nov 15;197(22):3511-20. doi: 10.1128/JB.00494-15. Epub 2015 Aug 31. PMID: 26324447

Hodowanec A, Williams B, Hanson B, Livak B, Keating S, Lurain N, Adeyemi O. Soluble CD163 But Not Soluble CD14 Is Associated With Cytomegalovirus Immunoglobulin G Antibody Levels in Virologically Suppressed HIV+ Individuals.   J Acquir Immune Defic Syndr. 2015 Dec 15;70(5):e171-4. doi: 10.1097/QAI.0000000000000841. No abstract available.  PMID: 26569178

Williams B, Livak B, Bahk M, Keating SM, Adeyemi OM. 'SCD14 and SCD163 Levels are correlated with VACS Index Scores: Initial Data from the Blunted Immune Recovery in CORE patients with HIV (BIRCH) cohort.  AIDS Res Hum Retroviruses. 2015 Sep 14. [Epub ahead of print] PMID: 26366931

Huhn G, Sigman A, Livak B. 'Simplification from twice-daily to once-daily darunavir/ritonavir in a randomized trial among HIV-infected persons with HIV-1 RNA suppression on antiretroviral therapy.' Antivir Ther. 2015 Apr 17. [Epub ahead of print] PMID: 25881614    

Romo FT, Aziz M, Livak B, Huesgen E, Colton B, Flanigan TP, Max B, Kessler H.  Renal Function Recovery and HIV Viral Suppression Following Tenofovir Discontinuation for Renal Impairment.  J AIDS Clin Res. 2014 Nov;5(11). pii: 379. PMID: 26097776 

Dickson PE, McNaughton KA, Hou L, Anderson LC, Long KH, & Chesler E J.  Sex and strain influence attribution of incentive salience to reward cues in mice.  Behavioural brain research, (2015) 292, 305-315. (PMID: 26102561)  

Crystal E. Love, Victoria E. Prince . Rest represses maturation within migrating facial branchiomotor neurons. Developmental Biology, available online 11 March 2015 doi:10.1016/j.ydbio.2015.02.021

Kubic JD, Lui JW, Little EC, Ludvik AE, Konda S, Salgia R, Aplin AE, Lang D. PAX3 and FOXD3 Promote CXCR4 Expression in Melanoma. J Biol Chem. 2015 Sep 4;290(36):21901-14. doi: 10.1074/jbc.M115.670976. Epub 2015 Jul 23. PMID: 26205821

Kubic JD, Little EC, Lui JW, Iizuka T, Lang D. PAX3 and ETS1 synergistically activate MET expression in melanoma cells. Oncogene. 2014 Dec 22. doi: 10.1038/onc.2014.420. PMID: 25531327

Lunderberg JM, Liszewski Zilla M, Missiakas D, Schneewind O.  Bacillus anthracis tagO Is Required for Vegetative Growth and Secondary Cell Wall Polysaccharide Synthesis. J Bacteriol. 2015 Nov 15;197(22):3511-20. doi: 10.1128/JB.00494-15. Epub 2015 Aug 31. PMID: 26324447

Liszewski Zilla M, Lunderberg JM, Schneewind O, Missiakas D.  Bacillus anthracis lcp Genes Support Vegetative Growth, Envelope Assembly, and Spore Formation.  J Bacteriol. 2015 Dec 1;197(23):3731-41. doi: 10.1128/JB.00656-15. Epub 2015 Sep 21. PMID: 26391207

Liszewski Zilla M, Chan YG, Lunderberg JM, Schneewind O, Missiakas D. LytR-CpsA-Psr enzymes as determinants of Bacillus anthracis secondary cell wall polysaccharide assembly. J Bacteriol. 2015 Jan;197(2):343-53. doi: 10.1128/JB.02364-14. Epub 2014 Nov 10. PMID: 25384480

Camp SM, Ceco E, Evenoski CL, Danilov SM, Zhou T, Chiang ET, Moreno-Vinasco L, Mapes B, Zhao J, Gursoy G, Brown ME, Adyshev DM, Siddiqui SS, Quijada H, Sammani S, Letsiou E, Saadat L, Yousef M, Wang T, Liang J, Garcia JG.   Unique Toll-Like Receptor 4 Activation by NAMPT/PBEF Induces NFκB Signaling and Inflammatory Lung Injury.  Sci Rep. 2015 Aug 14;5:13135. doi: 10.1038/srep13135. PMID: 26272519

Shen K, Ramirez B, Mapes B, Shen GR, Gokhale V, Brown ME, Santarsiero B, Ishii Y, Dudek SM, Wang T, Garcia JG.  Structure-Function Analysis of the Non-Muscle Myosin Light Chain Kinase (nmMLCK) Isoform by NMR Spectroscopy and Molecular Modeling: Influence of MYLK Variants.  PLoS One. 2015 Jun 25;10(6):e0130515. doi: 10.1371/journal.pone.0130515. eCollection 2015.  PMID: 26111161

Wardle MC, Marcus BA, de Wit H. A Preliminary Investigation of Individual Differences in Subjective Responses to D-Amphetamine, Alcohol, and Delta-9-Tetrahydrocannabinol Using a Within-Subjects Randomized Trial.  PLoS One. 2015 Oct 29;10(10):e0140501. doi: 10.1371/journal.pone.0140501. eCollection 2015  PMID:  26513587

Laukka T, Mariani CJ, Ihantola T, Cao JZ, Hokkanen J, Kaelin WG Jr, Godley LA, Koivunen P. Fumarate and Succinate Regulate Expression of Hypoxia-Inducible Genes via TET Enzymes.  J Biol Chem. 2015 Dec 23. pii: jbc.M115.688762. [Epub ahead of print] PMID: 26703470

Chapman CG, Mariani CJ, Wu F, Meckel K, Butun F, Chuang A, Madzo J, Bissonette MB, Kwon JH, Godley LA.  TET-catalyzed 5-hydroxymethylcytosine regulates gene expression in differentiating colonocytes and colon cancer.  Sci Rep. 2015 Dec 3;5:17568. doi: 10.1038/srep17568. PMID: 26631571

Moen EL, Mariani CJ, Zullow H, Jeff-Eke M, Litwin E, Nikitas JN, Godley LA. New themes in the biological functions of 5-methylcytosine and 5-hydroxymethylcytosine. Immunol Rev. 2015 Jan;263(1):36-49. doi: 10.1111/imr.12242. PMID: 25510270

Zhang MY, Churpek JE, Keel SB, Walsh T, Lee MK, Loeb KR, Gulsuner S, Pritchard CC, Sanchez-Bonilla M, Delrow JJ, Basom RS, Forouhar M, Gyurkocza B, Schwartz BS, Neistadt B, Marquez R, Mariani CJ, Coats SA, Hofmann I, Lindsley RC, Williams DA, Abkowitz JL, Horwitz MS, King MC, Godley LA, Shimamura A. Germline ETV6 mutations in familial thrombocytopenia and hematologic malignancy. Nat Genet. 2015 Feb;47(2):180-5. doi: 10.1038/ng.3177. Epub 2015 Jan 12. PMID: 25581430

Kim SM, Mayassi T, Jabri B. Innate immunity: actuating the gears of celiac disease pathogenesis.  Best Pract Res Clin Gastroenterol2015 Jun;29(3):425-35. doi: 10.1016/j.bpg.2015.05.001. Epub 2015 May 11. Review.  PMID: 26060107

Setty M, Discepolo V, Abadie V, Kamhawi S, Mayassi T, Kent A, Ciszewski C, Maglio M, Kistner E, Bhagat G, Semrad C, Kupfer SS, Green PH, Guandalini S, Troncone R, Murray JA, Turner JR, Jabri B.  Distinct and Synergistic Contributions of Epithelial Stress and Adaptive Immunity to Functions of Intraepithelial Killer Cells and Active Celiac Disease.  Gastroenterology. 2015 Sep;149(3):681-91.e10. doi: 10.1053/j.gastro.2015.05.013. Epub 2015 May 19. PMID:  26001928

Mayo LM, de Wit H. Acquisition of Responses to a Methamphetamine-Associated Cue in Healthy Humans: Self-Report, Behavioral, and Psychophysiological Measures. Neuropsychopharmacology. 2015 Jan 20. doi: 10.1038/npp.2015.21. [Epub ahead of print] PMID: 25601231

McMurray KM, Du X, Brownlee M, Palmer AA.  Neuronal overexpression of Glo1 or amygdalar microinjection of methylglyoxal is sufficient to regulate anxiety-like behavior in mice. Behav Brain Res. 2015 Dec 19. pii: S0166-4328(15)30335-1. doi: 10.1016/j.bbr.2015.12.026. [Epub ahead of print] PMID: 26711908

McMurray KM, Sidhu PS, Cook JM, Arnold LA, Palmer AA.  Genetic and pharmacological manipulation of glyoxalase 1 regulates voluntary ethanol consumption in mice. Addict Biol. 2015 Dec 22. doi: 10.1111/adb.12333. [Epub ahead of print] PMID: 26691867

Leung W, ... Miller ML, ...Elgin SC.  The Drosophila Muller F elements maintain a distinct set of genomic properties over 40 million years of evolution.  G3: GENES, GENOMES, GENETICS, 5(5):719-40, 2015.    PMCID: PMC4426361    

Miller ML, Daniels MD, Wang T, Chen J, Young J, Xu J, Wang Y, Yin D, Vu V, Husain AN, Alegre ML, Chong AS.  Spontaneous restoration of transplantation tolerance after acute rejection.  Nat Commun. 2015 Jul 7;6:7566. doi: 10.1038/ncomms8566. PMID: 26151823

Moen EL, Mariani CJ, Zullow H, Jeff-Eke M, Litwin E, Nikitas JN, Godley LA. New themes in the biological functions of 5-methylcytosine and 5-hydroxymethylcytosine. Immunol Rev. 2015 Jan;263(1):36-49. doi: 10.1111/imr.12242. PMID: 25510270

Zhang X, Moen EL, Liu C, Mu W, Gamazon ER, Delaney SM, Wing C, Godley LA, Dolan ME, Zhang W. Linking the genetic architecture of cytosine modifications with human complex traits. Hum Mol Genet. 2014 Nov 15;23(22):5893-905. doi: 10.1093/hmg/ddu313. Epub 2014 Jun 18 PMID: 24943591

Gerasimova T, Guo C, Ghosh A, Qiu X, Montefiori L, Verma-Guar J, Choi NM, Feeney AJ, Sen R.  A structural hierarchy mediated by multiple nuclear factors establishes IgH locus conformation.  Genes Dev 2015 Aug 15;29(16):1683-95. doi: 10.1101/gad.263871.115. PMID: 26302788

Morgan E, David MZ.  Do citation trends reflect epidemiologic patterns? Assessing MRSA, emerging and re-emerging pathogens, 1963-2014.  BMC Infect Dis. 2015 Oct 26;15:460. doi: 10.1186/s12879-015-1182-7. PMID: 26502873

Morgan E, Skaathun B, Michaels S, Young L, Khanna A, Friedman SR, Davis B, Pitrak D, Schneider J; UConnect Study Team.  Marijuana Use as a Sex-Drug is Associated with HIV Risk Among Black MSM and Their Network.   AIDS Behav. 2015 Sep 23. [Epub ahead of print] PMID: 26400079

Sharifi MN, Mowers EE, Drake LE, Macleod KF. Measuring autophagy in stressed cells. Methods Mol Biol. 2015;1292:129-50. doi: 10.1007/978-1-4939-2522-3_10. PMID: 25804753

Gamazon ER, Wheeler HE, Shah KP, Mozaffari SV, Aquino-Michaels K, Carroll RJ, Eyler AE, Denny JC; GTEx Consortium, Nicolae DL, Cox NJ, Im HK. A gene-based association method for mapping traits using reference transcriptome data. Nat Genet. 2015 Sep;47(9):1091-8. doi: 10.1038/ng.3367. Epub 2015 Aug 10. PMID: 26258848

Edelblum KL, Singh G, Odenwald MA, Lingaraju A, El Bissati K, McLeod R, Sperling AI, Turner JR. γδ Intraepithelial Lymphocyte Migration Limits Transepithelial Pathogen Invasion and Systemic Disease in Mice. Gastroenterology. 2015 Mar 3. pii: S0016-5085(15)00302-9. doi: 10.1053/j.gastro.2015.02.053 PMID: 25747597

Olsen AM.  Exceptional avian herbivores: multiple transitions toward herbivory in the bird order Anseriformes and its correlation with body mass. Ecol Evol. 2015 Oct 15;5(21):5016-32. doi: 10.1002/ece3.1787. eCollection 2015 Nov.  PMID:26640679

Olsen, Aaron M., Mark W. Westneat . StereoMorph: an R package for the collection of 3D landmarks and curves using a stereo camera setup. Methods in Ecology & Evolution. Article first published online : 2 JAN 2015, DOI: 10.1111/2041-210X.12326

Westneat MW, Olsen AM.  How fish power suction feeding. Proc Natl Acad Sci U S A. 2015 Jul 14;112(28):8525-6. doi: 10.1073/pnas.1510522112. Epub 2015 Jul 6. No abstract available. PMID:26150493

Palmer DH, Kronforst MR.  Divergence and gene flow among Darwin's finches: A genome-wide view of adaptive radiation driven by interspecies allele sharing.  Bioessays. 2015 Sep;37(9):968-74. doi: 10.1002/bies.201500047. Epub 2015 Jul 22. PMID: 26200327

Yetil A, Anchang B, Gouw AM, Adam SJ, Zabuawala T, Parameswaran R, van Riggelen J, Plevritis S, Felsher DW.  p19ARF is a critical mediator of both cellular senescence and an innate immune response associated with MYC inactivation in mouse model of acute leukemia.  Oncotarget. 2015 Feb 28;6(6):3563-77. PMID: 25784651

Nouri N, Patel MJ, Joksimovic M, Poulin JF, Anderegg A, Taketo MM, Ma YC, Awatramani R.  Excessive Wnt/beta-catenin signaling promotes midbrain floor plate neurogenesis, but results in vacillating dopamine progenitors.  Mol Cell Neurosci. 2015 Jul 8. pii: S1044-7431(15)30004-X. PMID: 26164566

Andrews SF, Kaur K, Pauli NT, Huang M, Huang Y, Wilson PC. High preexisting serological antibody levels correlate with diversification of the influenza vaccine response. J Virol. 2015 Mar 15;89(6):3308-17. doi: 10.1128/JVI.02871-14. Epub 2015 Jan 14. PMID: 25589639

Kagan CL, Banovich NE, Pavlovic BJ, Patterson K, Gallego Romero I, Pritchard JK, and Gilad Y.  Genetic Variation, Not Cell Type of Origin, Underlies Regulatory Differences in iPSCs.  bioRxiv. 2015 Jan: http://dx.doi.org/10.1101/013888

Gallego Romero I, Pavlovic BJ, Hernando-Herraez I, Zhou X, Ward MC, Banovich NE, Kagan CL, Burnett JE, Huang CH, Mitrano A, Chavarria CI, Friedrich Ben-Nun I, Li Y, Sabatini K, Leonardo TR, Parast M, Marques-Bonet T, Laurent LC, Loring JF, Gilad Y.  A panel of induced pluripotent stem cells from chimpanzees: a resource for comparative functional genomics.  Elife. 2015 Jun 23;4. doi: 10.7554/eLife.07103.

Thomas SM, Kagan C, Pavlovic BJ, Burnett J, Patterson K, Pritchard JK, Gilad Y.  Reprogramming LCLs to iPSCs Results in Recovery of Donor-Specific Gene Expression Signature.  PLoS Genet. 2015 May 7;11(5):e1005216. doi: 10.1371/journal.pgen.1005216. eCollection 2015 May. PMID: 25950834

Chang YG, Cohen SE, Phong C, Myers WK, Kim YI, Tseng R, Lin J, Zhang L, Boyd JS, Lee Y, Kang S, Lee D, Li S, Britt RD, Rust MJ, Golden SS, LiWang A.  Circadian rhythms. A protein fold switch joins the circadian oscillator to clock output in cyanobacteria.  Science. 2015 Jul 17;349(6245):324-8. doi: 10.1126/science.1260031. Epub 2015 Jun 25. PMID: 26113641

Pieretti J, Gehrke AR, Schneider I, Adachi N, Nakamura T, Shubin NH. Organogenesis in deep time: A problem in genomics, development, and paleontology. Proc Natl Acad Sci U S A. 2015 Apr 21;112(16):4871-6. doi: 10.1073/pnas.1403665112. PMID: 25901307

Nakamura T, Klomp J, Pieretti J, Schneider I, Gehrke AR, Shubin NH.  Molecular mechanisms underlying the exceptional adaptations of batoid fins.  Proc Natl Acad Sci U S A. 2015 Dec 29;112(52):15940-5. doi: 10.1073/pnas.1521818112. Epub 2015 Dec 7. PMID: 26644578

Piland NC, Winkler DW. 2015. Tree Swallow Frugivory in Winter.  Southeastern Naturalist 14(1):123-136.

Pineda FD, Medved M, Fan X, Ivancevic MK, Abe H, Shimauchi A, Newstead GM, Karczmar GS. Comparison of dynamic contrast enhanced MRI parameters of breast lesions at 1.5T and 3T: a pilot study. Br J Radiol. 2015 Mar 18:20150021. [Epub ahead of print] PMID: 25785918

Shimauchi A, Abe H, Schacht DV, Yulei J, Pineda FD, Jansen SA, Ganesh R, Newstead GM. Evaluation of Kinetic Entropy of Breast Masses Initially Found on MRI using Whole-lesion Curve Distribution Data: Comparison with the Standard Kinetic Analysis. Eur Radiol. 2015 Feb 20. [Epub ahead of print] PMID: 25698353

Powers ME, Bubeck Wardenburg J. Host Autophagy Combating S. aureus: α-Toxin Will Be Tolerated. Cell Host Microbe. 2015 Apr 8;17(4):419-20. doi: 10.1016/j.chom.2015.03.010 PMID: 25856749

Treger JS, Priest MF, Bezanilla F.  Single-molecule fluorimetry and gating currents inspire an improved optical voltage indicator. Elife. 2015 Nov 24;4. pii: e10482. doi: 10.7554/eLife.10482. PMID: 26599732

Cecchi F, Lih CJ, Lee YH, Walsh W, Rabe DC, Williams PM, Bottaro DP.  Expression array analysis of the hepatocyte growth factor invasive program. Clin Exp Metastasis. 2015 Oct; 32(7):659-76. doi: 10.1007/s10585-015-9735-0. Epub 2015 Aug 1.  PMID: 26231668   

Frankenberger C*, Rabe DC*, Bainer R, Conzen S, Becker L, Gilad Y, Rosner MR. (2015)  Metastasis suppressors regulate the tumor microenvironment by blocking recruitment of pro-metastatic tumor-associated macrophages. Cancer Res. 2015 Oct 1;75(19):4063-73. doi: 10.1158/0008-5472.CAN-14-3394. Epub 2015 Aug 3. PMID: 26238785  *Co-first authors  

Shapiro GI, McCallum S, Adams LM, Sherman L, Weller S, Swann S, Keer H, Miles D, Müller T, Rabe DC, Cecchi F, Bottaro DP, LoRusso P.  Erratum to: A Phase 1 dose-escalation study of the safety and pharmacokinetics of once-daily oral foretinib, a multi-kinase inhibitor, in patients with solid tumors. Invest New Drugs. 2015 Dec;33(6):1292. doi: 10.1007/s10637-015-0287-6. PMID: 26407571

Rajan AT, Boback JL, Dammann JF, Tenore FV, Wester BA, Otto KJ, Gaunt RA, Bensmaia SJ.  The effects of chronic intracortical microstimulation on neural tissue and fine motor behavior.  J Neural Eng. 2015 Oct 19;12(6):066018. [Epub ahead of print]  PMID: 26479701

Rangaraj VR, Knutson KL.  Association between sleep deficiency and cardiometabolic disease: implications for health disparities. Sleep Med. 2015 Mar 23. pii: S1389-9457(15)00648-6. doi: 10.1016/j.sleep.2015.02.535. [Epub ahead of print] PMID:26431758

Regnier SM, Kirkley AG, Ye H, El-Hashani E, Zhang X, Neel BA, Kamau W, Thomas CC, Williams AK, Hayes ET, Massad NL, Johnson DN, Huang L, Zhang C, Sargis RM. Dietary exposure to the endocrine disruptor tolylfluanid promotes global metabolic dysfunction in male mice. Endocrinology. 2015 Mar;156(3):896-910. doi: 10.1210/en.2014-1668. Epub 2014 Dec 23. PMID: 25535829

Brandt EJ, Regnier SM, Leung EK, Chou SH, Baron BW, Te HS, Davidson MH, Sargis RM Management of lipoprotein X and its complications in a patient with primary sclerosing cholangitis. Clin Lipidol. 2015 Aug 1;10(4):305-312.PMID: 26413163

Regnier SM, El-Hashani E, Kamau W, Zhang X, Massad NL, Sargis RM. Tributyltin differentially promotes development of a phenotypically distinct adipocyte. Obesity (Silver Spring). 2015 Sep;23(9):1864-71. doi: 10.1002/oby.21174. Epub 2015 Aug 4. PMID: 26243053

Rigie DS, La Rivière PJ.  Joint reconstruction of multi-channel, spectral CT data via constrained total nuclear variation minimization.  Phys Med Biol. 2015 Mar 7;60(5):1741-62. doi: 10.1088/0031-9155/60/5/1741. Epub 2015 Feb 6. PMID:  25658985

Modgil D, Rigie DS, Wang Y, Xiao X, Vargas PA, La Rivière PJ.  Material identification in x-ray microscopy and micro CT using multi-layer, multi-color scintillation detectors.  Phys Med Biol. 2015 Oct 21;60(20):8025-45. doi: 10.1088/0031-9155/60/20/8025. Epub 2015 Sep 30. PMID:  26422059

Beederman M, Kim SH, Rogers MR, Lyon SM, He TC, et al.  Osteoprotegerin deficiency results in disruption of posterofrontal suture closure in mice: implications in nonsyndromic craniosynostosis.  Plast Reconstr Surg. 2015 Jun;135(6):990e-999e. PubMed PMID: 26017615

Rose S, Andersen MS, Sidky EY, Pan X.  Noise properties of CT images reconstructed by use of constrained total-variation, data-discrepancy minimization.  Med Phys. 2015 May;42(5):2690-8. doi: 10.1118/1.4914148. PMID: 25979067

Roundtree IA, He C.  RNA epigenetics-chemical messages for posttranscriptional gene regulation. Curr Opin Chem Biol. 2015 Nov 25;30:46-51. doi: 10.1016/j.cbpa.2015.10.024. [Epub ahead of print] Review.  PMID: 26625014

Xu C, Wang X, Liu K, Roundtree IA, Tempel W, Li Y, Lu Z, He C, Min J.  Corrigendum: Structural basis for selective binding of m(6)A RNA by the YTHDC1 YTH domain.  Nat Chem Biol2015 Oct;11(10):815. doi: 10.1038/nchembio1015-815c. No abstract available. PMID: 26379027

Wang X, Zhao BS, Roundtree IA, Lu Z, Han D, Ma H, Weng X, Chen K, He C.  N6-methyladenosine modulates messenger RNA translation efficiency. Cell 2015. 161(6), 1388-99. PMID: 26046440.

Sullam KE, Rubin BER, Dalton CM, Kilham SS, Flecker AS, Russell JA Divergence across diet, time and populations rules out parallel evolution in the gut microbiomes of Trinidadian guppies. ISME J. 2015 Jan 9. doi: 10.1038/ismej.2014.231. [Epub ahead of print] PMID: 25575311

Sadinski M, Medved M, Karademir I, Wang S, Peng Y, Jiang Y, Sammet S, Karczmar G, Oto A. Short-term reproducibility of apparent diffusion coefficient estimated from diffusion-weighted MRI of the prostate.  Abdom Imaging. 2015 Oct;40(7):2523-8. doi: 10.1007/s00261-015-0396-x. PMID: 25805558

Van Rhein T, Alzahrany M, Banerjee A, Salzman G.  Fluid flow and particle transport in mechanically ventilated airways. Part I.  Fluid flow structures.  Med Biol Eng Comput. 2015 Nov 13. [Epub ahead of print] PMID: 26563199

Alzahrany M, Van Rhein T, Banerjee A, Salzman G.  Fluid flow and particle transport in mechanically ventilated airways. Part II: particle transport.  Med Biol Eng Comput. 2015 Nov 5. [Epub ahead of print] PMID: 26541600

Lu, Y. C., Nazarko, O. V., Sando, R., Salzman, G. S., Li, N.-S., Südhof, T. C., & Araç, D. Structural Basis of Latrophilin - FLRT - UNC5 Interaction in Cell Adhesion. Structure 2015Sep 1; 23(9), 1678–1691. doi:  10.1016/j.str.2015.06.024. PMCID: PMC4851429

Sander EL, Wootton JT, Allesina S. What Can Interaction Webs Tell Us About Species Roles? PLoS Comput Biol. 2015 Jul 21;11(7):e1004330. doi: 10.1371/journal.pcbi.1004330. eCollection 2015 Jul. PMID: 26197151

Smith MJ, Sander E, Barabás G, Allesina S. Stability and feedback levels in food web models. Ecol Lett. 2015 Apr 6. doi: 10.1111/ele.12416. [Epub ahead of print] PMID: 25847355

Zimmermann D, Santos A, Kovar DR, Rock RS.  Actin age orchestrates myosin-5 and myosin-6 run lengths. Curr Biol. 2015 Aug 3;25(15):2057-62. doi: 10.1016/j.cub.2015.06.033. Epub 2015 Jul 16. PMID: 26190073

Siraj AS, Bouma MJ, Santos-Vega M, Yeshiwondim AK, Rothman DS, Yadeta D, Sutton PC, Pascual M. Temperature and population density determine reservoir regions of seasonal persistence in highland malaria. Proc Biol Sci. 2015 Dec 7;282(1820). pii: 20151383. doi: 10.1098/rspb.2015.1383. PMID: 26631558

Gao J, Tong L, Argos M, Scannell Bryan M, Ahmed A, Rakibuz-Zaman M, Kibriya MG, Jasmine F, Slavkovich V, Graziano JH, Ahsan H, Pierce BL. The Genetic Architecture of Arsenic Metabolism Efficiency: A SNP-Based Heritability Study of Bangladeshi Adults. Environ Health Perspect. 2015 Mar 13. [Epub ahead of print] PMID: 25768001

Jiang J, Liu M, Parvez F, Wang B, Wu F, Eunus M, Bangalore S, Ahmed A, Islam T, Rakibuz-Zaman M, Hasan R, Sarwar G, Levy D, Argos M, Bryan MS, Graziano J, Hayes RB, Ahsan H, Chen Y. Association of major dietary patterns and blood pressure longitudinal change in Bangladesh. J Hypertens. 2015 Feb 16. [Epub ahead of print] PMID: 25693059

Jiang J, Liu M, Parvez F, Wang B, Wu F, Eunus M, Bangalore S, Newman JD, Ahmed A, Islam T, Rakibuz-Zaman M, Hasan R, Sarwar G, Levy D, Slavkovich V, Argos M, Scannell Bryan M, Farzan SF, Hayes RB, Graziano JH, Ahsan H, Chen Y. Association between Arsenic Exposure from Drinking Water and Longitudinal Change in Blood Pressure among HEALS Cohort Participants. Environ Health Perspect. 2015 Mar 27. [Epub ahead of print] PMID: 25816368

Kato N, Loh M, Takeuchi F, Verweij N, Wang X, Zhang W, Kelly TN, Saleheen D, Lehne B, Mateo Leach I, Drong AW, Abbott J, Wahl S, Tan ST, Scott WR, Campanella G, Chadeau-Hyam M, Afzal U, Ahluwalia TS, Bonder MJ, Chen P, Dehghan A, Edwards TL, Esko T, Go MJ, Harris SE, Hartiala J, Kasela S, Kasturiratne A, Khor CC, Kleber ME, Li H, Mok ZY, Nakatochi M, Sapari NS, Saxena R, Stewart AF, Stolk L, Tabara Y, Teh AL, Wu Y, Wu JY, Zhang Y, Aits I, Da Silva Couto Alves A, Das S, Dorajoo R, Hopewell JC, Kim YK, Koivula RW, Luan J, Lyytikäinen LP, Nguyen QN, Pereira MA, Postmus I, Raitakari OT, Bryan MS,  et al. Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.  Nat Genet. 2015 Nov;47(11):1282-93. doi: 10.1038/ng.3405. Epub 2015 Sep 21. PMID: 26390057

Farzan SF, Karagas MR, Jiang J, Wu F, Liu M, Newman JD, Jasmine F, Kibriya MG, Paul-Brutus R, Parvez F, Argos M, Bryan MS, Eunus M, Ahmed A, Islam T, Rakibuz-Zaman M, Hasan R, Sarwar G, Slavkovich V, Graziano J, Ahsan H, Chen Y. Gene-arsenic interaction in longitudinal changes of blood pressure: Findings from the Health Effects of Arsenic Longitudinal Study (HEALS) in Bangladesh. Toxicol Appl Pharmacol. 2015 Oct 1;288(1):95-105. doi: 10.1016/j.taap.2015.07.017. Epub 2015 Jul 26.  PMID: 26220686

Boecking, F and Scholz, M. (2015). Did the Nationalist Government  Manipulate the Chinese Bond Market? A Quantitative Perspective on Short-Term Price  Fluctuations of Domestic Government Bonds, 1932-1934. Frontiers of History in China  10, 126-144. 

Shah P and He YY.  Molecular Regulation of UV-Induced DNA Repair. Photochemistry and Photobiology, 2015 Mar-Apr; 91: 254-264. PMCID: PMC4355264

Piochon C, Kloth AD, Grasselli G, Titley HK, Nakayama H, Hashimoto K, Wan V, Simmons DH, Eissa T, Nakatani J, Cherskov A, Miyazaki T, Watanabe M, Takumi T, Kano M, Wang SS, Hansel C. Corrigendum: Cerebellar plasticity and motor learning deficits in a copy-number variation mouse model of autism. Nat Commun. 2015 Jan 27;6:6014. doi: 10.1038/ncomms7014. No abstract available. PMID: 25625889

Sivan A, Corrales L, Hubert N, Williams JB, Aquino-Michaels K, Earley ZM, Benyamin FW, Lei YM, Jabri B, Alegre ML, Chang EB, Gajewski TF. Commensal Bifidobacterium promotes antitumor immunity and facilitates anti-PD-L1 efficacy.  Science. 2015 Nov 27;350(6264):1084-9. doi: 10.1126/science.aac4255. Epub 2015 Nov 5. PMID: 26541606

Pho MT, Meltzer DO, Eavou R, Skaathun (Livak) B, Benbow N, Schneider JA, Pitrak D. Real-world costs of implementing routine HIV screening and linkage to care Open Forum Infectious Diseases 2015; 2 (suppl_1): 400. DOI: https://doi.org/10.1093/ofid/ofv133.276

Smith MJ, Sander E, Barabás G, Allesina S. Stability and feedback levels in food web models. Ecol Lett. 2015 Apr 6. doi: 10.1111/ele.12416. [Epub ahead of print] PMID: 25847355

Smits PD.  Expected time-invariant effects of biological traits on mammal species duration. Proc Natl Acad Sci U S A. 2015 Oct 20;112(42):13015-20. doi: 10.1073/pnas.1510482112. Epub 2015 Oct 5. PMID: 26438873

Brown, L.A., Cox, C., Baptiste, J., Summers, H., Button, R., Bahlow, K., Spurrier, V., Kyser, J., Luttge, B.G., Kuo, L., et al. (2015).  NMR Structure of the Myristylated Feline Immunodeficiency Virus Matrix Protein. Viruses 7, 2210-2229. PMCID: PMC4452903

Stam S, Alberts J, Gardel ML, Munro E.  Isoforms Confer Characteristic Force Generation and Mechanosensation by Myosin II Filaments. Biophys J. 2015 Apr 21;108(8):1997-2006. doi: 10.1016/j.bpj.2015.03.030. PMID: 25902439

Polk RC, Gergics P, Steimle JD, Li H, Moskowitz IP, Camper SA, Reeves RH.  The pattern of congenital heart defects arising from reduced Tbx5 expression is altered in a Down syndrome mouse model.  BMC Dev Biol. 2015 Jul 25;15:30. doi: 10.1186/s12861-015-0080-y. PMID:  26208718

Stepien, CC.  Impacts of geography, taxonomy and functional group on inorganic carbon use patterns in marine macrophytes.  Journal of Ecology, 2015 November; 103(6):1372-1383 Epub 2015 October 20.

Mao Q, Stinnett HK, Ho RK. Asymmetric cell convergence-driven zebrafish fin bud initiation and pre-pattern requires Tbx5a control of a mesenchymal Fgf signal.  Development 2015 Dec 15;142: 4329-4339; doi: 10.1242/dev.124750 Epub 2015 Nov 2. PMID: 26525676

Kim HK, Falugi F, Thomer L, Missiakas DM, Schneewind O. Protein A suppresses immune responses during Staphylococcus aureus bloodstream infection in guinea pigs. MBio. 2015 Jan 6;6(1). pii: e02369-14. doi: 10.1128/mBio.02369-14. PMID: 25564466

Ho EV, Thompson SL, Katzka WR, Sharifi MF, Knowles JA, Dulawa SC.  Clinically effective OCD treatment prevents 5-HT1B receptor-induced repetitive behavior and striatal activation. Psychopharmacology (Berl). 2016 Jan;233(1):57-70. doi: 10.1007/s00213-015-4086-8. Epub 2015 Sep 30. PMID: 26423528

Hrusch CL, Tjota MY, Sperling AI. The role of dendritic cells and monocytes in the maintenance and loss of respiratory tolerance. Curr Allergy Asthma Rep. 2015 Jan;15(1):494. doi: 10.1007/s11882-014-0494-9. PMID: 25430955

Treger JS, Priest MF, Bezanilla F. Single-molecule fluorimetry and gating currents inspire an improved optical voltage indicator. Elife. 2015 Nov 24;4. pii: e10482. doi: 10.7554/eLife.10482. PMID: 26599732

Li Q, Shen R, Treger JS, Wanderling SS, Milewski W, Siwowska K, Bezanilla F, Perozo E. Resting state of the human proton channel dimer in a lipid bilayer. Proc Natl Acad Sci U S A. 2015 Nov 3;112(44):E5926-35. doi: 10.1073/pnas.1515043112. Epub 2015 Oct 6. PMID: 26443860

Carvalho-de-Souza JL, Treger JS, Dang B, Kent SB, Pepperberg DR, Bezanilla F. Photosensitivity of neurons enabled by cell-targeted gold nanoparticles. Neuron. 2015 Apr 8;86(1):207-17. doi: 10.1016/j.neuron.2015.02.033. Epub 2015 Mar 12.PMID: 25772189

Tu TC, Brown NK, Kim TJ, Wroblewska J, Yang X, Guo X, Lee SH, Kumar V, Lee KM, Fu YX. CD160 is essential for NK-mediated IFN-γ production. J Exp Med. 2015 Feb 23. pii: jem.20131601. [Epub ahead of print]

Vaidya M, Kording K, Saleh M, Takahashi K, Hatsopoulos NG.  Neural coordination during reach-to-grasp. J Neurophysiol. 2015 Sep;114(3):1827-36. doi: 10.1152/jn.00349.2015. Epub 2015 Jul 29. PMID: 26224773

van de Geijn B, McVicker G, Gilad Y, Pritchard JK.  WASP: allele-specific software for robust molecular quantitative trait locus discovery.  Nat Methods. 2015 Nov;12(11):1061-3. doi: 10.1038/nmeth.3582. Epub 2015 Sep 14.  PMID: 26366987

Meyer WK, Venkat A, Kermany AR, van de Geijn B, Zhang S, Przeworski M.  Evolutionary history inferred from the de novo assembly of a nonmodel organism, the blue-eyed black lemur.  Mol Ecol. 2015 Sep;24(17):4392-405. doi: 10.1111/mec.13327. Epub 2015 Aug 24. PMID: 25233095

Meyer WK, Venkat A, Kermany AR, van de Geijn B, Zhang S, Przeworski M.  Evolutionary history inferred from the de novo assembly of a nonmodel organism, the blue-eyed black lemur.  Mol Ecol. 2015 Sep;24(17):4392-405. doi: 10.1111/mec.13327. Epub 2015 Aug 24. PMID: 25233095

Vo AH, McNally EM. Modifier genes and their effect on Duchenne muscular dystrophy. Curr Opin Neurol. 2015 Oct;28(5):528-34. doi: 10.1097/WCO.0000000000000240. PMID: 26263473

Albertin CB, Simakov O, Mitros T, Wang ZY, Pungor JR, Edsinger-Gonzales E, Brenner S, Ragsdale CW, Rokhsar DS. The octopus genome and the evolution of cephalopod neural and morphological novelties. Nature. 2015 Aug 13;524(7564):220-4. doi: 10.1038/nature14668. PMID: 26268193

Werner MS, Ruthenburg AJ.  Nuclear Fractionation Reveals Thousands of Chromatin-Tethered Noncoding RNAs Adjacent to Active Genes. Cell Rep. 2015 Aug 18;12(7):1089-98. doi: 10.1016/j.celrep.2015.07.033. Epub 2015 Aug 6. PMID: 26257179

Sivan A, Corrales L, Hubert N, Williams JB, Aquino-Michaels K, Earley ZM, Benyamin FW, Lei YM, Jabri B, Alegre ML, Chang EB, Gajewski TF. Commensal Bifidobacterium promotes antitumor immunity and facilitates anti-PD-L1 efficacy.  Science. 2015 Nov 27;350(6264):1084-9. doi: 10.1126/science.aac4255. Epub 2015 Nov 5. PMID: 26541606

Winger BM, Hosner PA, Bravo GA, Cuervo AM, Aristizábal N, Cueto LE, Bates JM.  Inferring speciation history in the Andes with reduced-representation sequence data: an example in the bay-backed antpittas (Aves; Grallariidae; Grallaria hypoleuca s. l.).  Mol Ecol. 2015 Nov 17. doi: 10.1111/mec.13477. [Epub ahead of print]  PMID: 26576683

Winger, BM & JM Bates. 2015. The tempo of trait-divergence in geographic isolation: Avian speciation   across the Marañon Valley of Peru. Evolution 69:772-787.

Heisler DB, Kudryashova E, Grinevich DO, Suarez C, Winkelman JD, Birukov KG, Kotha SR, Parinandi NL, Vavylonis D, Kovar DR, Kudryashov DS. ACTIN-DIRECTED TOXIN. ACD toxin-produced actin oligomers poison formin-controlled actin polymerization. Science. 2015 Jul 31;349(6247):535-9. doi: 10.1126/science.aab4090. PMID: 26228148

Rotty JD, Wu C, Haynes EM, Suarez C, Winkelman JD, Johnson HE, Haugh JM, Kovar DR, Bear JE. Profilin-1 serves as a gatekeeper for actin assembly by Arp2/3-dependent and -independent pathways. Dev Cell. 2015 Jan 12;32(1):54-67. doi: 10.1016/j.devcel.2014.10.026. Epub 2014 Dec 24. PMID: 25543281

Winston, M. E. & Herz, H. Unpaved roads alter foraging patterns of the leafcutter and Atta colombica. Studies on Neotropical Fauna and Environment. 2015 Apr; 50:(2) DOI: 10.1080/01650521.2015.1020702

Wright CS, Banerjee S, Iyer-Biswas S, Crosson S, Dinner AR, Scherer NF. Intergenerational continuity of cell shape dynamics in Caulobacter crescentus. Sci Rep. 2015 Mar 17;5:9155. doi: 10.1038/srep09155. PMID: 25778096

Liang Y, Yang K, Guo J, Wroblewska J, Fu YX, Peng H. Innate lymphotoxin receptor mediated signaling promotes HSV-1 associated neuroinflammation and viral replication. Sci Rep. 2015 May 20;5:10406. doi: 10.1038/srep10406. PMID:25993659

Tu TC, Brown NK, Kim TJ, Wroblewska J, Yang X, Guo X, Lee SH, Kumar V, Lee KM, Fu YX. CD160 is essential for NK-mediated IFN-γ production. J Exp Med. 2015 Feb 23. pii: jem.20131601. [Epub ahead of print]

Pogačić T, Maillard MB, Leclerc A, Hervé C, Chuat V, Yee AL, Valence F, Thierry A. A methodological approach to screen diverse cheese-related bacteria for their ability to produce aroma compounds. Food Microbiol. 2015 Apr; 46:145-53.

Zhang C, Doherty JA, Burgess S, Hung RJ, Lindström S, Kraft P, Gong J, Amos CI, Sellers TA, Monteiro AN, Chenevix-Trench G, Bickeböller H, Risch A, Brennan P, Mckay JD, Houlston RS, Landi MT, Timofeeva MN, Wang Y, Heinrich J, Kote-Jarai Z, Eeles RA, Muir K, Wiklund F, Grönberg H, Berndt SI, Chanock SJ, Schumacher F, Haiman CA, Henderson BE, Amin Al Olama A, Andrulis IL, Hopper JL, Chang-Claude J, John EM, Malone KE, Gammon MD, Ursin G, Whittemore AS, Hunter DJ, Gruber SB, Knight JA, Hou L, Le Marchand L, Newcomb PA, Hudson TJ, Chan AT, Li L, Woods MO, Ahsan H, Pierce BL; GECCO and GAME-ON Network: CORECT, DRIVE, ELLIPSE, FOCI, and TRICL.  Genetic determinants of telomere length and risk of common cancers: a Mendelian randomization study.  Hum. Mol. Genet., 2015 Sep 15;24(18):5356-66. doi: 10.1093/hmg/ddv252. Epub 2015 Jul 2. PMID: 26138067 

Guo, X, Liang Y, Zhang Y, Lasorella A, Kee BL, Fu Y-X.  Innate Lymphoid Cells Control Early Colonization Resistance against Intestinal Pathogens through ID2-Dependent Regulation of the Microbiota.  Immunity. 2015 Apr; 42(4): 731-43. doi: 10.1016/j.immuni.2015.03.012. PMID: 25902484

Xie T, Zmyslowski AM, Zhang Y, Radhakrishnan I. Structural Basis for Multi-specificity of MRG Domains. Structure. 2015 Jun 2;23(6):1049-57. doi: 10.1016/j.str.2015.03.020   PMC4456287

Zhou KI, Parisien M, Dai Q, Liu N, Diatchenko L, Sachleben JR, Pan T.  N6-Methyladenosine Modification in a Long Noncoding RNA Hairpin Predisposes Its Conformation to Protein Binding.  J Mol Biol. 2015 Sep 4. pii: S0022-2836(15)00486-6. doi: 10.1016/j.jmb.2015.08.021. [Epub ahead of print] PMID: 26343757

Xie T, Zmyslowski AM, Zhang Y, Radhakrishnan I.  Structural Basis for Multi-specificity of MRG Domains. Structure. 2015 Jun 2;23(6):1049-57. doi: 10.1016/j.str.2015.03.020 PMC4456287

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