2018 Student Publications

Aiello, B.R., Hardy, A.R.*, Hale, M.E., Westneat, M.W. (2018). Fins as sensors: exploring the roles of fin mechanosensation in movement, posture and touch. Integrative and Comparative Biology.

Aiello, B. R., Hardy, A. R., Cherian, C., Olsen, A. M., Orsbon, C. P., Hale, M. E., & Westneat, M. W. (2018). A comparison of pectoral fin ray morphology and its impact on fin ray flexural stiffness in labriform swimmers. Journal of morphology.

Aiello, B.R., Hardy, A.R., Cherian, C., Olsen, A.M., Ahn, S.E., Hale, M.E., Westneat, M.W. (2018). The correlated evolution of pectoral fin mechanics and swimming behavior in Labridae: insights into design, performance, and ecology. Journal of Experimental Biology, 221(1).

Fang, Y., Jiang, Y., Acaron Ledesma, H., Yi, J., Gao, X., Weiss, D. E., Shi, F. and Tian, B. (2018). Texturing silicon nanowires for highly localized optical modulation of cellular dynamics. Nano letters, 18(7): 4487-4492.

Chiang, C.WK.,  Marcus, J.H., Al-Asadi, H., et. al. (2018). Genomic history of a flagship population in human genetics: The Sardinian people. Nature Genetics 50(1426-1434).

Ali, N. (2018). Digest: Stress and inbreeding depression in Drosophila melanogaster. Evolution, 72(8): 1727-1729.

Racine, J.J., Stewart, I., Ratiu, J., Christianson, G., Lowell, E., Helm, K., Allocco, J., Maser, R.S., Chen, Y., Lutz, C.M., Roopenian, D., Schloss, J., DiLorenzo, T.P., Serreze, D.V. (2018). Improved Murine MHC-Deficient HLA Transgenic NOD Mouse Models for Type 1 Diabetes Therapy Development. Diabetes, 67(5):923-935.

Bernstein, C. S., Anderson, M.T., Gohel, C., Slater, K., Gross, J. M. Agarwala, S. (2018). The cellular bases of choroid fissure formation and closure. Dev. Biol, 440(2):137-151.

Ginat, D.T., Anthony, G.J., Christoforidis, G., Oto, A., Dalag, L., Sammet, S. (2018). Comparison between whole-body and head and neck neurovascular coils for 3-T magnetic resonance proton resonance frequency shift thermography guidance in the head and neck region. Lasers in Medical Science, 33(2):369-373.

de Barros Damgaard, P. M., Kamm, J., Moreno-Mayar, JV., Kroonen, G., Peyrot, M., Barjamovic, G., Rasmussen, S., Zacho, C., Baimukhanov, N., Zaibert, V., Merz, V., Biddanda, A. (2018). The first horse herders and the impact of early Bronze Age steppe expansions into Asia. Science, 360(6396).

Gu, S., Borowska, M.T., Boughter, C.T., Adams, E.J. (2018). Butyrophilin3A proteins and Vγ9Vδ2 T cell activation. Semin Cell Dev Biol. S1084-9521(16)30436-0.

Gu, S., Borowska, M.T., Boughter, C.T., Adams, E.J. (2018). Butyrophilin3A proteins and Vγ9Vδ2 T cell activation. Semin Cell Dev Biol. S1084-9521(16)30436-0.

Coers, J., Brown, H.M., Hwang, S., Taylor, G. (2018). Partners in anti-crime: how interferon-inducible GTPases and autophagy proteins team up in cell-intrinsic host defense. Curr Opin Immunol, 54: 93-101.

Brown, H.M., Biering, S.B., Zhu, A., Choi, J., Hwang, S. (2018). Demarcation of Viral Shelters Results in Destruction by Membranolytic GTPases: Antiviral Function of Autophagy Proteins and Interferon-Inducible GTPases. Bioessays, 40(6).

Wu, Wei-Sheng, Wei-Che Huang, Jordan S. Brown, Donglei Zhang, Xiaoyan Song, Hao Chen, Shikui Tu, Zhiping Weng, and Heng-Chi Lee (2018). pirScan: a webserver to predict piRNA targeting sites and to avoid transgene silencing in C. elegans. Nucleic acids research 46(W1): W43.

Cesar, C., Lax, S., Larsen, P., Stephens, B., Hampton-Marcell, J., Edwardson, C.F. , Henry, C., Bonn, B.V., Gilbert, J.A. (2018). Environmental Sources of Bacteria Differentially Influence Host-Associated Microbial Dynamics. mSystems, 3(3).

Chao, J.L., and Savage, P.A. (2018). Unlocking the Complexities of Tumor-Associated Regulatory T cells. The Journal of Immunology, 200(2):415-421.

Koranda, J.L., Dore, L., Shi, H., Patel, M.J., Vaasjo, L.O., Rao, M.N., Chen, K., Lu, Z., Yi, Y., Chi, W., He, C., Zhuang, X. (2018). Mettl14 is essential for epitranscriptomic regulation of striatal function and learning. Neuron. 99(2):1-10.

Saupe, E.E., Barve, N., Ownes, H.L., Cooper, J.C., Hosner, P.A., Peterson, A.T. (2018). Reconstructing Ecological Niche Evolution When Niches Are Incompletely Characterized. Syst Biol, 67(3):428-438.

Da Silva, T., Fernando, S.W., Robbins, M.B., Cooper, J.C., Fokam, E.B., Peterson, A.T. (2018). Recognition of a new generic-level swallow taxon from Central Africa. Journal of Avian Biology.

Xiao, A.,* Crosby, J.,* Kang, H., Malin, M., Hasan, Y., Chumura, S., Al-Hallaq, H. (2018). Single-institution report of setup margins of voluntary deep-inspiration breath-hold (DIBH) whole breast radiotherapy implemented with real-time surface imaging. J Appl Clin Med Phys, 19(4):205-213. *Authors contributed equally to the manuscript.

Reardon, C.A., Lingaraju, A., Schoenfelt, K.Q., Zhou, G., Cui, C., Jacobs-El, H., Babenko, I., Hoofnagle, A., Czyz, D., Shuman, H., Vaisar, T., Becker, L. (2018). Obesity and insulin resistance promote atherosclerosis through an IFNgamma-regulated macrophage protein network. Cell Report, 20(13): 3021-3030. 

West, D.C., Kocherginsky, M., Tonsing-Carter, E.Y., Dolcen, D.N., Hosfield, D.J., Lastra, R.R., Sinnwell, J.P., Thompson, K.J., Bowie, K.R., Harkless, R.V., Skor, M.N., Pierce, C.F., Styke, S.C., Kim, C.R., de Wet, L., Greene, G.L., Boughey, J.C., Goetz, M.P., Kalari, K.R., Wang, L., Fleming, G.F., Györffy, B., Conzen, S.D. (2018).  Discovery of a Glucocorticoid Receptor (GR) Activity Signature Using Selective GR Antagonism in ER-Negative Breast Cancer. Clin Cancer Res., 24(14): 3433-3446.

West, D.C., Kocherginsky, M., Tonsing-Carter, E.Y., Dolcen, D.N., Hosfield, D.J., Lastra, R.R., Sinnwell, J.P., Thompson, K.J., Bowie, K.R., Harkless, R.V., Skor, M.N., Pierce, C.F., Styke, S.C., Kim, C.R., de Wet, L., Greene, G.L., Boughey, J.C., Goetz, M.P., Kalari, K.R., Wang, L., Fleming, G.F., Györffy, B., Conzen, S.D. (2018).  Discovery of a Glucocorticoid Receptor (GR) Activity Signature Using Selective GR Antagonism in ER-Negative Breast Cancer. Clin Cancer Res., 24(14): 3433-3446.

Drazer, M.W., and Sweis, R.F. (2018). Low clinical adoption of tumor genomic profiling: cause for concern?. J Med Econ, 21(7): 721-723.

Tawana, K., Drazer, M.W., Churpek, J.E. (2018). Universal genetic testing for inherited susceptibility in children and adults with myelodysplastic syndrome and acute myeloid leukemia: are we there yet? Leukemia, 32(7): 1482-1492.

Drazer, M.W., Kadri, S., Sukhanova, M., Patil, S.A., West, A.H., Feurstein, S., Calderon, D.A., Jones, M.F., Weipert, C.M., Daugherty, C.K., Ceballos-López, A.A., Raca, G., Lingen, M.W., Li, Z., Segal, J.P., Churpek, J.E., Godley, L.A. (2018). Prognostic tumor sequencing panels frequently identify germ line variants associated with hereditary hematopoietic malignancies. Blood Adv, 2(2): 146-150.

Guthmiller J.J., Dugan, H.L., Neu, K.E., Lan, L., Wilson, P.C.. (2018). An efficient method to generate monoclonal antibodies from human B cells. Methods in Molecular Biology.

Meisel, M.,* Hinterleitner, R,.* Pacis, A., Chen,  L., Earley, Z., Mayassi, T., Pierre, J., Ernest, J., Galipeau, H., Thuille, N., Bouziat, R., Buscarlet, M., Ringus, D., Wang, Y., Li, Y., Dinh, V., Kim, S.M., McDonald, B., Zurenski, M., Musch, M., Furtado, G.C., Lira, S., Baier, G., Chang, E., Eren, A., Weber, C., Busque, L., Godley, L., Verdu, E., Barreiro, L., Jabri, B. (2018). Microbial dependent inflammation drives myeloproliferative disease in a Tet2 deficient host. Nature, 557(7706):580-584.

Ling, A,, Gruener, R.F., Fessler, J., Huang, R.S. (2018). More than fishing for a cure: The promises and pitfalls of high throughput cancer cell line screens. Pharmacol  Ther.

Matson, V., Fessler, J., Bao, R., Chongsuwat, T., Zha, Y., Alegre, M.L., Luke, J.J., Gajewski, T.F. (2018). The commensal microbiome is associated with anti-PD-1 efficacy in metastatic melanoma patients. Science, 359(6371): 104-108.

Dennis, P.W.*, Flynn, P.J.*, de Souza, W.M., Singer, J.B., Moreau, C.S.,  Wilson, S.J. and Gifford, R.J. (2018). Insights into circovirus host range from  the genomic fossil record. Journal of Virology.  *authors contributed equally

Foy, J.J., Mitta, P., Nowosatka, L.R., Mendel, K.R., Li, H., Giger, M.L., Al-Hallaq, H., Armato, S.G. (2018). Variations in algorithm implementation among quantitative texture analysis software packages. Proc. SPIE 10575, Medical Imaging 2018: Computer-Aided Diagnosis, 105751K.

Martinez-Guryn, K., Hubert, N., Frazier, K., Urlass, S., Musch, M.W., Ojeda, P., Pierre, J.F., Miyoshi, J., Sontag, T.J., Cham, C.M., Reardon, C.A., Leone, V., Chang, E.B. (2018). Small Intestine Microbiota Regulate Host Digestive and Absorptive Adaptive Responses to Dietary Lipids. Cell Host Microbe, 23(4): 458-469.

Gataulin, D.V., Carey, J.N., Li, J., Shah, P., Grubb, J.T., Bishop, D.K. (2018). The ATPase activity of E. coli RecA prevents accumulation of toxic complexes formed by erroneous binding to undamaged double stranded DNA. Nucleic Acids Research.

Wolfman, S.L., Gill, D.F., Bogdanic, F., Long, K., Al-Hasani, R., McCall, J.G., Bruchas, M.R., McGehee, D.S. (2018). Nicotine aversion is mediated by GABAergic interpeduncular nucleus inputs to laterodorsal tegmentum. Nature Communications, 9(1):2710.

Chen, H., Cade, B.E., Gleason, K.J., Bjonnes, A.C., Stilp, A.M., Sofer, T., Conomos, M.P., Ancoli-Israel, S., Arens, R., Azarbarzin, A., Bell, G.I., Below, J.E., Chun, S., Evans, D.S., Ewert, R., Frazier-Wood, A.C., Gharib, S.A., Haba-Rubio, J., Hagen, E.W., Heinzer, R., Hillman, D.R., Johnson, W.C., Kutalik, Z., Lane, J.M., Larkin, E.K., Lee, S.K., Liang, J., Loredo, J.S., Mukherjee, S., Palmer, L.J., Papanicolaou, G.J., Penzel, T., Peppard, P.E., Post, W.S., Ramos, A.R., Rice, K., Rotter, J.I., Sands, S.A., Shah, N.A., Shin, C., Stone, K.L., Stubbe, B., Sul, J.H., Tafti, M., Taylor, K.D., Teumer, A., Thornton, T.A., Tranah, G.J., Wang, C., Wang, H., Warby, S.C., Wellman, D.A., Zee, P.C., Hanis, C.L., Laurie, C.C., Gottlieb, D.J., Patel, S.R., Zhu, X., Sunyaev, S.R., Saxena, R., Lin, X., Redline, S. (2018). Multiethnic Meta-analysis Identifies RAI1 as a Possible Obstructive Sleep Apnea-related Quantitative Trait Locus in Men. Am J Respir Cell Mol Biol, 58(3): 391-401. 

Goodman, J.M., & Bensmaia, S.J. (2018). The neural basis of haptic perception. In: The Stevens  Handbook of Experimental Psychology and Cognitive Neuroscience. Fourth Edition. Volume 2:Sensation, Perception, & Attention. Eds. Wixted, J.T. and Serences, J.T. John Wiley & Sons, New  York, NY.

Ling, A., Gruener, R.F., Fessler, J., Huang, R.S. (2018). More than fishing for a cure: The Promises and Pitfalls of High Throughput Cancer Cell Line Screens. Pharmacology and Therapeutics.

Gudmundsson, E., Labby, Z., Straus, C.M., Sensakovic, W.F., Li, F., Rose, B., Cunliffe, A., Kindler, H.L., Armato, S.G. III (2018). Dynamic contrast-enhanced CT for the assessment of tumour response in malignant pleural mesothelioma: a pilot study. European Radiology, pp:1-7.

Gudmundsson, E., Straus, C.M., Armato, S.G. III (2018). Deep convolutional neural networks for the automated segmentation of malignant pleural mesothelioma on computed tomography scans. Journal of Medical Imaging, 5(3).

Han, J., Perez, J.T., Chen, C., Li, Y., Benitez, A., Kandasamy, M., Lee, Y., Andrade, J., tenOever, B., Manicassamy, B. (2018). Genome-wide CRISPR/Cas9 Screen Identifies Host Factors Essential for Influenza Virus Replication. Cell Rep, 23(2):596-607.

Montefiori, L.E., Sobreira, D.R., Sakabe, N.J., Aneas, I., Joslin, A.C., Hansen, G.T., Bozek, G., Moskowitz, M.P., McNally, E.M., Nobrega, M.A. (2018). A promoter interaction map for cardiovascular disease genetics. eLife.

Aiello, B.R., Hardy, A.R.*, Hale, M.E., Westneat, M.W. (2018). Fins as sensors: exploring the roles of fin mechanosensation in movement, posture and touch. Integrative and Comparative Biology.

Aiello, B. R., Hardy, A. R., Cherian, C., Olsen, A. M., Orsbon, C. P., Hale, M. E., & Westneat, M. W. (2018). A comparison of pectoral fin ray morphology and its impact on fin ray flexural stiffness in labriform swimmers. Journal of morphology.

Aiello, B.R., Hardy, A.R., Cherian, C., Olsen, A.M., Ahn, S.E., Hale, M.E., Westneat, M.W. (2018). The correlated evolution of pectoral fin mechanics and swimming behavior in Labridae: insights into design, performance, and ecology. Journal of Experimental Biology, 221(1).

Kudryashova, E., Heisler, D.B., Williams, B., Harker, A.J., Shafer, K., Quinlan, M.E., Kovar, D.R., Vavylonis, D., Kudryashov, D.S. (2018). Actin Cross-Linking Toxin Is a Universal Inhibitor of Tandem-Organized and Oligomeric G-Actin Binding Proteins. Curr Biol 28(10): 1536-1547.

Zhao, Y., Harrison, D.L., Song, Y., Ji, J., Huang, J. and Hui, E. (2018). Antigen-Presenting Cell-Intrinsic PD-1 Neutralizes PD-L1 in cis to Attenuate PD-1 Signaling in T Cells. Cell reports, 24(2): 379-390.

Tchernookova, B.K., Heer, C., Young, M., et al. (2018). Activation of retinal glial (Müller) cells by extracellular ATP induces pronounced increases in extracellular H+ flux. Lewin AS, ed. PLoS ONE, 13(2): e0190893.

Kim, R.Y., Mangu, D., Hoffman, A.S., Kovash, R., Jung, E., Itoh, N., & Voskuhl, R. (2018). Oestrogen receptor beta ligand acts on CD11c+ cells to mediate protection in experimental autoimmune encephalomyelitis. Brain, 141(1): 132-147. 

Miller M.L., McIntosh C.M., Williams J.B., Wang Y., Hollinger M.K., Isaad N. J., Moon J.J., Gajewski T.F., Chong A.S., and Alegre M.L. (2018). Distinct Graft-Specific TCR Avidity Profiles during Acute Rejection and Tolerance. Cell Reports, 24(8): 2112-2126.

Lachance, J. B., Webber, J.L., Hong, L., Dinner, A.R., Rebay, I. (2018). Cooperative recruitment of Yan via a high affinity ETS super-site organizes repression to confer specificity and robustness to cardiac cell fate specification. Genes & Development, 32(5-6):1-13.

An, N., Khan, S., Imgruet, M.K., Gurbuxani, S.K., Konecki, S.N., Burgess, M.R., & McNerney, M.E. (2018). Gene dosage effect of CUX1 in a murine model disrupts HSC homeostasis and controls the severity and mortality of MDS. Blood, 131(24): 2682-2697.

Johnson, M.B., Hoffmann, J.N., You, H.M., Lastra, R.R., Fernandez, S., Strober, J.W., Allaw, A.B., Brady, M.J., Conzen, S.D., McClintock, M.K., (2018). Psychosocial Stress Exposure Disrupts Mammary Gland Development. J Mammary Gland Biol Neoplasia, 23(1-2): 59-73.

Montefiori, L.E., Sobreira, D.R., Sakabe, N.J., Aneas, I., Joslin, A.C., Hansen, G.T., Bozek, G., Moskowitz, M.P., McNally, E.M., Nobrega, M.A. (2018). A promoter interaction map for cardiovascular disease genetics. eLife.

Boogerd, J.C., Zhu, X., Aneas, I., Sakabe, N.J., Zhang, L., Sobreira, D.S., Montefiori, L.E., Bogomolovas, J., Joslin, A.C., Zhou, B., Chen, J., Nobrega, M., Evans, S.M. (2018). Tbx20 is required in mid-gestation cardiomyocytes and plays a central role in atrial development. Circulation Research, 123(4).

Li, J., Shalev-Benami, M., Sando, R., Jiang, X., Kibrom, A., Wang, J., Leon, K., Katanski, C.,  Nazarko, O., Lu, Y.C. and Sdhof, T.C. (2018). Structural basis for teneurin function in circuit-wiring: a toxin motif at the synapse. Cell, 173(3): 735-748. 

Li, J., Shalev-Benami, M., Sando, R., Jiang, X., Kibrom, A., Leon, K., Katanski, C., Nazarko, O., Lu, Y., Südhof, T., Skiniotis, G., Araç, D. (2018). Structure of the circuit-wiring protein Teneurin uncovers homology to bacterial Tc-toxins. Cell, 173(3):735-748.

Khan, T., Kandola, T.S., Wu, J., Venkatesan, S., Ketter, E., Lange, J.J., Rodríguez, G.A., Box, A., Unruh, J.R., Cook, M., Halfmann, R. (2018). Quantifying Nucleation In Vivo Reveals the Physical Basis of Prion-like Phase Behavior. Mol Cell, 71(1): 155-168.

Meisel, M.,* Hinterleitner, R,.* Pacis, A., Chen,  L., Earley, Z., Mayassi, T., Pierre, J., Ernest, J., Galipeau, H., Thuille, N., Bouziat, R., Buscarlet, M., Ringus, D., Wang, Y., Li, Y., Dinh, V., Kim, S.M., McDonald, B., Zurenski, M., Musch, M., Furtado, G.C., Lira, S., Baier, G., Chang, E., Eren, A., Weber, C., Busque, L., Godley, L., Verdu, E., Barreiro, L., Jabri, B. (2018). Microbial dependent inflammation drives myeloproliferative disease in a Tet2 deficient host. Nature, 557(7706):580-584.

An, N., Khan, S., Imgruet, M.K., Gurbuxani, S.K., Konecki, S.N., Burgess, M.R., & McNerney, M.E. (2018). Gene dosage effect of CUX1 in a murine model disrupts HSC homeostasis and controls the severity and mortality of MDS. Blood, 131(24): 2682-2697.

Iribarren, S., Siegel, K., Hirshfield, S., Olender, S., Voss, J., Krongold, J., Luft, H., Schnall, R. (2018).  Self-Management Strategies for Coping with Adverse Symptoms in Persons Living with HIV with HIV Associated Non-AIDS Conditions. AIDS Behav., 22(1): 297-307.

Guthmiller J.J., Dugan, H.L., Neu, K.E., Lan, L., Wilson, P.C.. (2018). An efficient method to generate monoclonal antibodies from human B cells. Methods in Molecular Biology.

Chen, Y., Wohlbold, T.J., Nai-Ying Zheng, Huang, M., Huang, Y., Neu, K.E., Lee, J., Wan, H., Rojas, K.T., Kirkpatrick, E., Henry, C., Palm, A.E., Stamper, C.T., Lan, L.Y., Topham, D.J., Treanor, J., Wrammert, J., Ahmed, R., Eichelberger, M.C., Georgiou, G., Krammer, F., Wilson, P.C. (2018). Influenza Infection in Humans Induces Broadly Cross-Reactive and Protective Neuraminidase-Reactive Antibodies. Cell, 173(2): 417-429.

Cesar, C., Lax, S., Larsen, P., Stephens, B., Hampton-Marcell, J., Edwardson, C.F. , Henry, C., Bonn, B.V., Gilbert, J.A. (2018). Environmental Sources of Bacteria Differentially Influence Host-Associated Microbial Dynamics. mSystems, 3(3).

Infield, D.T., Lee, E.E.L., Galpin, J.D., Galles, G.D., Bezanilla, F., Ahern, C.A. (2018). Replacing voltage sensor arginines with citrulline provides mechanistic insight into charge versus shapes. J. Gen Physio., 150(7): 1017-1024.

Nazarko, O., Kibrom, A., Winkler, J., Leon, K., Stoveken, H., Salzman, G., Merdas, K., Lu, Y., Narkhede, P., Tall, G., Prömel, S., Araç, D. (2018). A comprehensive mutagenesis screen of the adhesion GPCR Latrophilin-1/ADGRL-1. iScience, 3:264-278.

Li, J., Shalev-Benami, M., Sando, R., Jiang, X., Kibrom, A., Leon, K., Katanski, C., Nazarko, O., Lu, Y., Südhof, T., Skiniotis, G., Araç, D. (2018). Structure of the circuit-wiring protein Teneurin uncovers homology to bacterial Tc-toxins. Cell, 173(3):735-748.

Chambers, B., Levy, M., Dechery, J. B., and MacLean, J. N. (2018). Ensemble stacking mitigates biases in inference of synaptic connectivity. Network Neuroscience, 2(1):60-85.

Wu, Y., Han, B., Li, Y., Munro, E., Odde, D.J., Griffin, E.E. (2018). Rapid diffusion-state switching underlies stable cytoplasmic gradients in the Caenorhabditis eleganszygote. Proceedings of the National Academy of Sciences, 115(36): E8440-E8449.

Ling, A., Gruener, R.F., Fessler, J., Huang, R.S. (2018). More than fishing for a cure: The promises and pitfalls of high throughput cancer cell line screens. Pharmacol  Ther.

Reardon, C.A.*, Lingaraju, A.*, Schoenfelt, K.Q., Zhou, G., Cui, C., Babenko, I., Hoofnagle, A., Vaisar, T., Becker, L. (2018). Obesity and insulin resistance promote atherosclerosis through an IFNgamma-regulated macrophage protein network. Cell Rep, 23(10) :3021-30.

Mozaffari, S.V., Stein, M.M., Magnaye, K.M., Nicolae, D.L., Ober, C. (2018). Parent of origin gene expression in a founder population identifies two new imprinted genes at known imprinted regions. PLOS One, 13(9): e0203906.

 Bigham, A.W., Magnaye, K.M., Dunn, D.M., Weiss, R.B., Bamshad, M.J. (2018). Complex signatures of natural selection at GYPA. Human Genetics, 137(2): 151-160.

*Stein, M.M., *Thompson, E.E., *Schoettler, N., Helling, B.A., Magnaye, K.M., Stanhope, C., Igartua, C., Morin, A., Washington III, C., Nicolae, D.L., Bonnelykke, K., Ober, C. (2018). A decade of research on the 17q12-21 asthma locus: Piecing together the puzzle. Journal of Allergy and Clinical Immunology, 142(3): 749-764.

Chiang, C.WK.,  Marcus, J.H., et. al. (2018). Genomic history of a flagship population in human genetics: The Sardinian people. Nature Genetics 50(1426-1434).

Meisel, M.,* Hinterleitner, R,.* Pacis, A., Chen,  L., Earley, Z., Mayassi, T., Pierre, J., Ernest, J., Galipeau, H., Thuille, N., Bouziat, R., Buscarlet, M., Ringus, D., Wang, Y., Li, Y., Dinh, V., Kim, S.M., McDonald, B., Zurenski, M., Musch, M., Furtado, G.C., Lira, S., Baier, G., Chang, E., Eren, A., Weber, C., Busque, L., Godley, L., Verdu, E., Barreiro, L., Jabri, B. (2018). Microbial dependent inflammation drives myeloproliferative disease in a Tet2 deficient host. Nature, 557(7706):580-584.

*Bhanvadia, R.R., *VanOpstall, C., Brechka, H., Barashi, N.S., Gillard, M., McAuley, E.M., Vasquez, J.M., Paner, G., Chan, W.C., Andrade, J., De Marzo, A.M., Han, M., Szmulewitz, R.Z., Vander Griend, D.J. (2018). MEIS1 and MEIS2 Expression and Prostate Cancer Progression: A Role For HOXB13 Binding Partners in Metastatic Disease. Clin Cancer Res., 24(15): 3668-3680.

Miller M.L., McIntosh C.M., Williams J.B., Wang Y., Hollinger M.K., Isaad N. J., Moon J.J., Gajewski T.F., Chong A.S., and Alegre M.L. (2018). Distinct Graft-Specific TCR Avidity Profiles during Acute Rejection and Tolerance. Cell Reports, 24(8): 2112-2126.

McIntosh, C.M., Chen, L., Shaiber, A., Eren, A.M., Alegre, M.L. (2018). Gut microbes contribute to variation in solid organ transplant outcomes in mice. Microbiome, 6(1):96.

Foy, J.J., Mitta, P., Nowosatka, L.R., Mendel, K.R., Li, H., Giger, M.L., Al-Hallaq, H., Armato, S.G. (2018). Variations in algorithm implementation among quantitative texture analysis software packages. Proc. SPIE 10575, Medical Imaging 2018: Computer-Aided Diagnosis, 105751K.

Montefiori, L.E., Sobreira, D.R., Sakabe, N.J., Aneas, I., Joslin, A.C., Hansen, G.T., Bozek, G., Moskowitz, M.P., McNally, E.M., Nobrega, M.A. (2018). A promoter interaction map for cardiovascular disease genetics. eLife.

Boogerd, J.C., Zhu, X., Aneas, I., Sakabe, N.J., Zhang, L., Sobreira, D.S., Montefiori, L.E., Bogomolovas, J., Joslin, A.C., Zhou, B., Chen, J., Nobrega, M., Evans, S.M. (2018). Tbx20 is required in mid-gestation cardiomyocytes and plays a central role in atrial development. Circulation Research, 123(4).

Mork, R., Hogan, P., Muenks, C., Boyle, M., Thompson, R., Morelli, J., Sullivan, M., Gehlert, S., Ross, D., Bubeck-Wardenburg, J., Rzhetsky, A., Burnham, C., Fritz, S. (2018). Comprehensive modeling reveals proximity, seasonality, and hygiene practices as key determinants of MRSA colonization in exposed households. Pediatric Research.

Shiquan, S., Zhu, J., Mozaffari, S.V., Ober, C., Chen, M., and Zhou, X. (2018). Heritability Estimation and Differential Analysis with Generalized Linear Mixed Models in RNA Sequencing and Bisulfite Sequencing Studies. Bioinformatics.

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