2018 Student Publications

Fang, Y., Jiang, Y., Acaron Ledesma, H., Yi, J., Gao, X., Weiss, D. E., Shi, F. and Tian, B. (2018). Texturing silicon nanowires for highly localized optical modulation of cellular dynamics. Nano letters, 18(7): 4487-4492.

Ali, N. (2018). Digest: Stress and inbreeding depression in Drosophila melanogaster. Evolution, 72(8): 1727-1729.

Racine, J.J., Stewart, I., Ratiu, J., Christianson, G., Lowell, E., Helm, K., Allocco, J., Maser, R.S., Chen, Y., Lutz, C.M., Roopenian, D., Schloss, J., DiLorenzo, T.P., Serreze, D.V. (2018). Improved Murine MHC-Deficient HLA Transgenic NOD Mouse Models for Type 1 Diabetes Therapy Development. Diabetes, 67(5):923-935.

Bernstein, C. S., Anderson, M.T., Gohel, C., Slater, K., Gross, J. M. Agarwala, S. (2018). The cellular bases of choroid fissure formation and closure. Dev. Biol, 440(2):137-151.

Ginat, D.T., Anthony, G.J., Christoforidis, G., Oto, A., Dalag, L., Sammet, S. (2018). Comparison between whole-body and head and neck neurovascular coils for 3-T magnetic resonance proton resonance frequency shift thermography guidance in the head and neck region. Lasers in Medical Science, 33(2):369-373.

de Barros Damgaard, P. M., Kamm, J., Moreno-Mayar, JV., Kroonen, G., Peyrot, M., Barjamovic, G., Rasmussen, S., Zacho, C., Baimukhanov, N., Zaibert, V., Merz, V., Biddanda, A. (2018). The first horse herders and the impact of early Bronze Age steppe expansions into Asia. Science, 360(6396).

Gu, S., Borowska, M.T., Boughter, C.T., Adams, E.J. (2018). Butyrophilin3A proteins and Vγ9Vδ2 T cell activation. Semin Cell Dev Biol. S1084-9521(16)30436-0.

Coers, J., Brown, H.M., Hwang, S., Taylor, G. (2018). Partners in anti-crime: how interferon-inducible GTPases and autophagy proteins team up in cell-intrinsic host defense. Curr Opin Immunol, 54: 93-101.

Brown, H.M., Biering, S.B., Zhu, A., Choi, J., Hwang, S. (2018). Demarcation of Viral Shelters Results in Destruction by Membranolytic GTPases: Antiviral Function of Autophagy Proteins and Interferon-Inducible GTPases. Bioessays, 40(6).

Wu, Wei-Sheng, Wei-Che Huang, Jordan S. Brown, Donglei Zhang, Xiaoyan Song, Hao Chen, Shikui Tu, Zhiping Weng, and Heng-Chi Lee (2018). pirScan: a webserver to predict piRNA targeting sites and to avoid transgene silencing in C. elegans. Nucleic acids research 46(W1): W43.

Cesar, C., Lax, S., Larsen, P., Stephens, B., Hampton-Marcell, J., Edwardson, C.F. , Henry, C., Bonn, B.V., Gilbert, J.A. (2018). Environmental Sources of Bacteria Differentially Influence Host-Associated Microbial Dynamics. mSystems, 3(3).

Chao, J.L., and Savage, P.A. (2018). Unlocking the Complexities of Tumor-Associated Regulatory T cells. The Journal of Immunology, 200(2):415-421.

Koranda, J.L., Dore, L., Shi, H., Patel, M.J., Vaasjo, L.O., Rao, M.N., Chen, K., Lu, Z., Yi, Y., Chi, W., He, C., Zhuang, X. (2018). Mettl14 is essential for epitranscriptomic regulation of striatal function and learning. Neuron. 99(2):1-10.

Saupe, E.E., Barve, N., Ownes, H.L., Cooper, J.C., Hosner, P.A., Peterson, A.T. (2018). Reconstructing Ecological Niche Evolution When Niches Are Incompletely Characterized. Syst Biol, 67(3):428-438.

Da Silva, T., Fernando, S.W., Robbins, M.B., Cooper, J.C., Fokam, E.B., Peterson, A.T. (2018). Recognition of a new generic-level swallow taxon from Central Africa. Journal of Avian Biology.

Vieira, M.C., Zinder, D., Cobey, S. (2018). Selection and Neutral Mutations Drive Pervasive Mutability Losses in Long-Lived Anti-HIV B-Cell Lineages. Molecular Biology and Evolution, 35(5): 1135-1146.

Xiao, A.,* Crosby, J.,* Kang, H., Malin, M., Hasan, Y., Chumura, S., Al-Hallaq, H. (2018). Single-institution report of setup margins of voluntary deep-inspiration breath-hold (DIBH) whole breast radiotherapy implemented with real-time surface imaging. J Appl Clin Med Phys, 19(4):205-213. *Authors contributed equally to the manuscript.

Reardon, C.A., Lingaraju, A., Schoenfelt, K.Q., Zhou, G., Cui, C., Jacobs-El, H., Babenko, I., Hoofnagle, A., Czyz, D., Shuman, H., Vaisar, T., Becker, L. (2018). Obesity and insulin resistance promote atherosclerosis through an IFNgamma-regulated macrophage protein network. Cell Report, 20(13): 3021-3030. 

West, D.C., Kocherginsky, M., Tonsing-Carter, E.Y., Dolcen, D.N., Hosfield, D.J., Lastra, R.R., Sinnwell, J.P., Thompson, K.J., Bowie, K.R., Harkless, R.V., Skor, M.N., Pierce, C.F., Styke, S.C., Kim, C.R., de Wet, L., Greene, G.L., Boughey, J.C., Goetz, M.P., Kalari, K.R., Wang, L., Fleming, G.F., Györffy, B., Conzen, S.D. (2018).  Discovery of a Glucocorticoid Receptor (GR) Activity Signature Using Selective GR Antagonism in ER-Negative Breast Cancer. Clin Cancer Res., 24(14): 3433-3446.

West, D.C., Kocherginsky, M., Tonsing-Carter, E.Y., Dolcen, D.N., Hosfield, D.J., Lastra, R.R., Sinnwell, J.P., Thompson, K.J., Bowie, K.R., Harkless, R.V., Skor, M.N., Pierce, C.F., Styke, S.C., Kim, C.R., de Wet, L., Greene, G.L., Boughey, J.C., Goetz, M.P., Kalari, K.R., Wang, L., Fleming, G.F., Györffy, B., Conzen, S.D. (2018).  Discovery of a Glucocorticoid Receptor (GR) Activity Signature Using Selective GR Antagonism in ER-Negative Breast Cancer. Clin Cancer Res., 24(14): 3433-3446.

Drazer, M.W., and Sweis, R.F. (2018). Low clinical adoption of tumor genomic profiling: cause for concern?. J Med Econ, 21(7): 721-723.

Tawana, K., Drazer, M.W., Churpek, J.E. (2018). Universal genetic testing for inherited susceptibility in children and adults with myelodysplastic syndrome and acute myeloid leukemia: are we there yet? Leukemia, 32(7): 1482-1492.

Drazer, M.W., Kadri, S., Sukhanova, M., Patil, S.A., West, A.H., Feurstein, S., Calderon, D.A., Jones, M.F., Weipert, C.M., Daugherty, C.K., Ceballos-López, A.A., Raca, G., Lingen, M.W., Li, Z., Segal, J.P., Churpek, J.E., Godley, L.A. (2018). Prognostic tumor sequencing panels frequently identify germ line variants associated with hereditary hematopoietic malignancies. Blood Adv, 2(2): 146-150.

Ling, A,, Gruener, R.F., Fessler, J., Huang, R.S. (2018). More than fishing for a cure: The promises and pitfalls of high throughput cancer cell line screens. Pharmacol  Ther.

Matson, V., Fessler, J., Bao, R., Chongsuwat, T., Zha, Y., Alegre, M.L., Luke, J.J., Gajewski, T.F. (2018). The commensal microbiome is associated with anti-PD-1 efficacy in metastatic melanoma patients. Science, 359(6371): 104-108.

Dennis, P.W.*, Flynn, P.J.*, de Souza, W.M., Singer, J.B., Moreau, C.S.,  Wilson, S.J. and Gifford, R.J. (2018). Insights into circovirus host range from  the genomic fossil record. Journal of Virology.  *authors contributed equally

Foy, J.J., Mitta, P., Nowosatka, L.R., Mendel, K.R., Li, H., Giger, M.L., Al-Hallaq, H., Armato, S.G. (2018). Variations in algorithm implementation among quantitative texture analysis software packages. Proc. SPIE 10575, Medical Imaging 2018: Computer-Aided Diagnosis, 105751K.

Foy JJ, Robinson KR, Li H, Giger ML, Al-Hallaq H, Armato SG III (2018). Variation in algorithm implementation across radiomics software. Journal of Medical Imaging 5: 044505-1–044505-10, 2018. 

Martinez-Guryn, K., Hubert, N., Frazier, K., Urlass, S., Musch, M.W., Ojeda, P., Pierre, J.F., Miyoshi, J., Sontag, T.J., Cham, C.M., Reardon, C.A., Leone, V., Chang, E.B. (2018). Small Intestine Microbiota Regulate Host Digestive and Absorptive Adaptive Responses to Dietary Lipids. Cell Host Microbe, 23(4): 458-469.

Gataulin, D.V., Carey, J.N., Li, J., Shah, P., Grubb, J.T., Bishop, D.K. (2018). The ATPase activity of E. coli RecA prevents accumulation of toxic complexes formed by erroneous binding to undamaged double stranded DNA. Nucleic Acids Research.

Wolfman, S.L., Gill, D.F., Bogdanic, F., Long, K., Al-Hasani, R., McCall, J.G., Bruchas, M.R., McGehee, D.S. (2018). Nicotine aversion is mediated by GABAergic interpeduncular nucleus inputs to laterodorsal tegmentum. Nature Communications, 9(1):2710.

Chen, H., Cade, B.E., Gleason, K.J., Bjonnes, A.C., Stilp, A.M., Sofer, T., Conomos, M.P., Ancoli-Israel, S., Arens, R., Azarbarzin, A., Bell, G.I., Below, J.E., Chun, S., Evans, D.S., Ewert, R., Frazier-Wood, A.C., Gharib, S.A., Haba-Rubio, J., Hagen, E.W., Heinzer, R., Hillman, D.R., Johnson, W.C., Kutalik, Z., Lane, J.M., Larkin, E.K., Lee, S.K., Liang, J., Loredo, J.S., Mukherjee, S., Palmer, L.J., Papanicolaou, G.J., Penzel, T., Peppard, P.E., Post, W.S., Ramos, A.R., Rice, K., Rotter, J.I., Sands, S.A., Shah, N.A., Shin, C., Stone, K.L., Stubbe, B., Sul, J.H., Tafti, M., Taylor, K.D., Teumer, A., Thornton, T.A., Tranah, G.J., Wang, C., Wang, H., Warby, S.C., Wellman, D.A., Zee, P.C., Hanis, C.L., Laurie, C.C., Gottlieb, D.J., Patel, S.R., Zhu, X., Sunyaev, S.R., Saxena, R., Lin, X., Redline, S. (2018). Multiethnic Meta-analysis Identifies RAI1 as a Possible Obstructive Sleep Apnea-related Quantitative Trait Locus in Men. Am J Respir Cell Mol Biol, 58(3): 391-401. 

Goodman, J.M., & Bensmaia, S.J. (2018). The neural basis of haptic perception. In: The Stevens  Handbook of Experimental Psychology and Cognitive Neuroscience. Fourth Edition. Volume 2:Sensation, Perception, & Attention. Eds. Wixted, J.T. and Serences, J.T. John Wiley & Sons, New  York, NY.

Ling, A., Gruener, R.F., Fessler, J., Huang, R.S. (2018). More than fishing for a cure: The Promises and Pitfalls of High Throughput Cancer Cell Line Screens. Pharmacology and Therapeutics.

Gudmundsson, E., Labby, Z., Straus, C.M., Sensakovic, W.F., Li, F., Rose, B., Cunliffe, A., Kindler, H.L., Armato, S.G. III (2018). Dynamic contrast-enhanced CT for the assessment of tumour response in malignant pleural mesothelioma: a pilot study. European Radiology, pp:1-7.

Gudmundsson, E., Straus, C.M., Armato, S.G. III (2018). Deep convolutional neural networks for the automated segmentation of malignant pleural mesothelioma on computed tomography scans. Journal of Medical Imaging, 5(3).

Han, J., Perez, J.T., Chen, C., Li, Y., Benitez, A., Kandasamy, M., Lee, Y., Andrade, J., tenOever, B., Manicassamy, B. (2018). Genome-wide CRISPR/Cas9 Screen Identifies Host Factors Essential for Influenza Virus Replication. Cell Rep, 23(2):596-607.

Aiello, B.R., Hardy, A.R.*, Hale, M.E., Westneat, M.W. (2018). Fins as sensors: exploring the roles of fin mechanosensation in movement, posture and touch. Integrative and Comparative Biology.

Aiello, B. R., Hardy, A. R., Cherian, C., Olsen, A. M., Orsbon, C. P., Hale, M. E., & Westneat, M. W. (2018). A comparison of pectoral fin ray morphology and its impact on fin ray flexural stiffness in labriform swimmers. Journal of morphology.

Aiello, B.R., Hardy, A.R., Cherian, C., Olsen, A.M., Ahn, S.E., Hale, M.E., Westneat, M.W. (2018). The correlated evolution of pectoral fin mechanics and swimming behavior in Labridae: insights into design, performance, and ecology. Journal of Experimental Biology, 221(1).

Kudryashova, E., Heisler, D.B., Williams, B., Harker, A.J., Shafer, K., Quinlan, M.E., Kovar, D.R., Vavylonis, D., Kudryashov, D.S. (2018). Actin Cross-Linking Toxin Is a Universal Inhibitor of Tandem-Organized and Oligomeric G-Actin Binding Proteins. Curr Biol 28(10): 1536-1547.

Zhao, Y., Harrison, D.L., Song, Y., Ji, J., Huang, J. and Hui, E. (2018). Antigen-Presenting Cell-Intrinsic PD-1 Neutralizes PD-L1 in cis to Attenuate PD-1 Signaling in T Cells. Cell reports, 24(2): 379-390.

Tchernookova, B.K., Heer, C., Young, M., et al. (2018). Activation of retinal glial (Müller) cells by extracellular ATP induces pronounced increases in extracellular H+ flux. Lewin AS, ed. PLoS ONE, 13(2): e0190893.

Kim, R.Y., Mangu, D., Hoffman, A.S., Kovash, R., Jung, E., Itoh, N., & Voskuhl, R. (2018). Oestrogen receptor beta ligand acts on CD11c+ cells to mediate protection in experimental autoimmune encephalomyelitis. Brain, 141(1): 132-147. 

Foy, J.J., Mitta, P., Nowosatka, L.R., Mendel, K.R., Li, H., Giger, M.L., Al-Hallaq, H., Armato, S.G. (2018). Variations in algorithm implementation among quantitative texture analysis software packages. Proc. SPIE 10575, Medical Imaging 2018: Computer-Aided Diagnosis, 105751K.

Miller M.L., McIntosh C.M., Williams J.B., Wang Y., Hollinger M.K., Isaad N. J., Moon J.J., Gajewski T.F., Chong A.S., and Alegre M.L. (2018). Distinct Graft-Specific TCR Avidity Profiles during Acute Rejection and Tolerance. Cell Reports, 24(8): 2112-2126.

Lachance, J. B., Webber, J.L., Hong, L., Dinner, A.R., Rebay, I. (2018). Cooperative recruitment of Yan via a high affinity ETS super-site organizes repression to confer specificity and robustness to cardiac cell fate specification. Genes & Development, 32(5-6):1-13.

Li, J., Shalev-Benami, M., Sando, R., Jiang, X., Kibrom, A., Wang, J., Leon, K., Katanski, C.,  Nazarko, O., Lu, Y.C. and Sdhof, T.C. (2018). Structural basis for teneurin function in circuit-wiring: a toxin motif at the synapse. Cell, 173(3): 735-748. 

Khan, T., Kandola, T.S., Wu, J., Venkatesan, S., Ketter, E., Lange, J.J., Rodríguez, G.A., Box, A., Unruh, J.R., Cook, M., Halfmann, R. (2018). Quantifying Nucleation In Vivo Reveals the Physical Basis of Prion-like Phase Behavior. Mol Cell, 71(1): 155-168.

Meisel, M.,* Hinterleitner, R,.* Pacis, A., Chen,  L., Earley, Z., Mayassi, T., Pierre, J., Ernest, J., Galipeau, H., Thuille, N., Bouziat, R., Buscarlet, M., Ringus, D., Wang, Y., Li, Y., Dinh, V., Kim, S.M., McDonald, B., Zurenski, M., Musch, M., Furtado, G.C., Lira, S., Baier, G., Chang, E., Eren, A., Weber, C., Busque, L., Godley, L., Verdu, E., Barreiro, L., Jabri, B. (2018). Microbial dependent inflammation drives myeloproliferative disease in a Tet2 deficient host. Nature, 557(7706):580-584.

An, N., Khan, S., Imgruet, M.K., Gurbuxani, S.K., Konecki, S.N., Burgess, M.R., & McNerney, M.E. (2018). Gene dosage effect of CUX1 in a murine model disrupts HSC homeostasis and controls the severity and mortality of MDS. Blood, 131(24): 2682-2697.

Iribarren, S., Siegel, K., Hirshfield, S., Olender, S., Voss, J., Krongold, J., Luft, H., Schnall, R. (2018).  Self-Management Strategies for Coping with Adverse Symptoms in Persons Living with HIV with HIV Associated Non-AIDS Conditions. AIDS Behav., 22(1): 297-307.

Jenna J. Guthmiller, Haley L. Dugan, Karlynn E. Neu, Lan, L., Patrick C. Wilson. (2018). An efficient method to generate monoclonal antibodies from human B cells. Methods in Molecular Biology.

Chen, Y., Wohlbold, T.J., Nai-Ying Zheng, Huang, M., Huang, Y., Neu, K.E., Lee, J., Wan, H., Rojas, K.T., Kirkpatrick, E., Henry, C., Palm, A.E., Stamper, C.T., Lan, L.Y., Topham, D.J., Treanor, J., Wrammert, J., Ahmed, R., Eichelberger, M.C., Georgiou, G., Krammer, F., Wilson, P.C. (2018). Influenza Infection in Humans Induces Broadly Cross-Reactive and Protective Neuraminidase-Reactive Antibodies. Cell, 173(2): 417-429.

Infield, D.T., Lee, E.E.L., Galpin, J.D., Galles, G.D., Bezanilla, F., Ahern, C.A. (2018). Replacing voltage sensor arginines with citrulline provides mechanistic insight into charge versus shapes. J. Gen Physio., 150(7): 1017-1024.

Nazarko, O., Kibrom, A., Winkler, J., Leon, K., Stoveken, H., Salzman, G., Merdas, K., Lu, Y., Narkhede, P., Tall, G., Prömel, S., Araç, D. (2018). A comprehensive mutagenesis screen of the adhesion GPCR Latrophilin-1/ADGRL-1. iScience, 3:264-278.

Li, J., Shalev-Benami, M., Sando, R., Jiang, X., Kibrom, A., Leon, K., Katanski, C., Nazarko, O., Lu, Y., Südhof, T., Skiniotis, G., Araç, D. (2018). Structure of the circuit-wiring protein Teneurin uncovers homology to bacterial Tc-toxins. Cell, 173(3):735-748.

Chambers, B., Levy, M., Dechery, J. B., and MacLean, J. N. (2018). Ensemble stacking mitigates biases in inference of synaptic connectivity. Network Neuroscience, 2(1):60-85.

Wu, Y., Han, B., Li, Y., Munro, E., Odde, D.J., Griffin, E.E. (2018). Rapid diffusion-state switching underlies stable cytoplasmic gradients in theCaenorhabditis eleganszygote. Proceedings of the National Academy of Sciences, 115(36): E8440-E8449.

Reardon, C.A.*, Lingaraju, A.*, Schoenfelt, K.Q., Zhou, G., Cui, C., Babenko, I., Hoofnagle, A., Vaisar, T., Becker, L. (2018). Obesity and insulin resistance promote atherosclerosis through an IFNgamma-regulated macrophage protein network. Cell Rep, 23(10) :3021-30.

Mozaffari, S.V., Stein, M.M., Magnaye, K.M., Nicolae, D.L., Ober, C. (2018). Parent of origin gene expression in a founder population identifies two new imprinted genes at known imprinted regions. PLOS One, 13(9): e0203906.

 Bigham, A.W., Magnaye, K.M., Dunn, D.M., Weiss, R.B., Bamshad, M.J. (2018). Complex signatures of natural selection at GYPA. Human Genetics, 137(2): 151-160.

*Stein, M.M., *Thompson, E.E., *Schoettler, N., Helling, B.A., Magnaye, K.M., Stanhope, C., Igartua, C., Morin, A., Washington III, C., Nicolae, D.L., Bonnelykke, K., Ober, C. (2018). A decade of research on the 17q12-21 asthma locus: Piecing together the puzzle. Journal of Allergy and Clinical Immunology, 142(3): 749-764.

Chiang, C.WK.,  Marcus, J.H., Sidore, C., Al-Asadi, H., . . . , Cucca, F., Novembre, J. (2018). Genomic history of a flagship population in human genetics: The Sardinian people. Nature Genetics.

Montefiori, L.E., Sobreira, D.R., Sakabe, N.J., Aneas, I., Joslin, A.C., Hansen, G.T., Bozek, G., Moskowitz, M.P., McNally, E.M., Nobrega, M.A. (2018). A promoter interaction map for cardiovascular disease genetics. eLife.

Boogerd, J.C., Zhu, X., Aneas, I., Sakabe, N.J., Zhang, L., Sobreira, D.S., Montefiori, L.E., Bogomolovas, J., Joslin, A.C., Zhou, B., Chen, J., Nobrega, M., Evans, S.M. (2018). Tbx20 is required in mid-gestation cardiomyocytes and plays a central role in atrial development. Circulation Research, 123(4).

Mork, R., Hogan, P., Muenks, C., Boyle, M., Thompson, R., Morelli, J., Sullivan, M., Gehlert, S., Ross, D., Bubeck-Wardenburg, J., Rzhetsky, A., Burnham, C., Fritz, S. (2018). Comprehensive modeling reveals proximity, seasonality, and hygiene practices as key determinants of MRSA colonization in exposed households. Pediatric Research.

Shiquan, S., Zhu, J., Mozaffari, S.V., Ober, C., Chen, M., and Zhou, X. (2018). Heritability Estimation and Differential Analysis with Generalized Linear Mixed Models in RNA Sequencing and Bisulfite Sequencing Studies. Bioinformatics.

Hart, M.W., Stover, D.A., Guerra, V., Mozaffari, S.V., Ober, C., Mugal, C.F., and Kaj, I. (2018). Positive selection on human gam- ete-recognition genes. PeerJ, 6(1):e4259-35.

Mozaffari, S.V., Stein, M.M., Magnaye, K.M., Nicolae, D.L., and Ober, C. (2018). Gene Expression and Methylation of Imprinted Genes in the Hutterites.

Tung, E.L., Gao, Y., Peek, M.E., Nocon, R.S., Gunter, K.E., Lee, S.M., Chin, M.H. (2018). Patient Experience of Chronic Illness Care and Medical Home Transformation in Safety Net Clinics. Health Services Research, 53(1): 469-488.

Koranda, J.L., Dore, L., Shi, H., Patel, M.J., Vaasjo, L., Rao, M.N., Chen, K., Lu, Z., Yi, Y., Chi, W., He, C., Zhuang, X. (2018). Mettl14 is essential for epitranscriptomic regulation of striatal function and learning. Neuron 99(2):283-292.

Shi, H., Zhang, X., Weng, Y., Lu, Z., Liu, Y., Lu, Z., Li, J., Hao, P., Zhang, Y., Zhang, F., Wu, Y., Delgado, J.Y., Su, Y., Patel, M.J., Cao, X., Shen, B., Huang, X., Su, Y., Ming, G., Zhuang, X., Song, H., He, C., Zhou, T. (2018). m6A facilitates hippocampus-dependent learning and memory through Ythdf1. Nature. (In press.)

Petrosky, A.L. (2018). Digest: Extra‐pair mating and inbreeding avoidance in a socially monogamous fairy‐wren. Evolution, 72(7).

Press, D.J., Ibraheem, A., Dolan, M.E., Goss, K., Conzen, S., and Huo, D. (2018). Racial disparities in omission of oncotype DX but no racial disparities in chemotherapy receipt following completed oncotype DX test results. Breast Cancer Res Treatment.

Park, S., Zhang, J., Reyer, M.A., Zareba, J., Troy, A.A., Fei, J. (2018). Conducting Multiple Imaging Modes by One Fluorescence Microscope. Journal of Visualized Experiments.

Rosenberg, J., and Huang, J. (2018). CD8+ T cells and NK cells: parallel and complementary soldiers of immunotherapy. Current Opinion in Chemical Engineering, 19:9-20.

Regnier, S.M., Kirkley, A.G., Ruiz, D., Kamau, W., Wu, Q., Kannan, K., and Sargis, R.M. (2018).  Diet-Dependence of Metabolic Perturbations Mediated by the Endocrine Disruptor Tolylfluanid.  Endocrine Connections, 7(1): 52-59.

Kirkley, A.G., Carmean, C.M., Ruiz, D., Ye, H., Regnier, S.M., Poudel, A., Hara, M., Kamau, W., Johnson, D.N., Roberts, A.A., Parsons, P.J., Seino, S., and Sargis, R.M. (2018).  Arsenic Exposure Induces Glucose Intolerance and Alters Global Energy Metabolism.  American Journal of Physiology: Regulatory, Integrative and Comparative Physiology, 314(2): R294-R303.

Whitewoods, C.D., Cammarata, J., Venza, Z.N., Sang, S., Crook, A.D., Aoyama, T., Wang, X.Y., Waller, M., Kamisugi, Y., Cuming, A.C., Nimchuk, Z.L, Roeder, A.H.K, Scalon, M., Harrospm, J., Szövényi, P. (2018). CLAVATA Was a Genetic Novelty for the Morphological Innovation of 3D Growth in Land Plants. Current Biology, 28(15): 2365-2376.

Maynard, D.S., Serván, C.A., and Allesina, S. (2018). Network spandrels reflect ecological  assembly. Ecology Letters, 21(3): 324-334.

Serván, C.A., J.A., C., Grilli, J., Morrison, K. & Allesina, S. (2018). Coexistence in random  ecosystems. Nature Ecology & Evolution, 2: 1237–1242.

Dorai, T., Shah, A., Summers, F., et al. (2018). NRH:quinone oxidoreductase 2 (NQO2) and glutaminase (GLS) both play a role in large extracellular vesicles (LEV) formation in preclinical LNCaP-C4-2B  prostate cancer model of progressive metastasis. The Prostate: 1-15.

Delmont, T.O., Quince, C., Shaiber, A., Esen, O.C., Lee, S.T., Rappé, M.S., MacLellan, S.L., Lücker, S., Eren, A.M. (2018). Nitrogen-fixing populations of Planctomycetes and Proteobacteria are abundant in surface ocean metagenomes. Nature microbiology, 3:804-813.

McIntosh, C.M., Chen, L., Shaiber, A., Eren, A.M., Alegre, M.L. (2018). Gut microbes contribute to variation in solid organ transplant outcomes in mice. Microbiome, 6(1):96.

Silliman, K., Bowyer, T., & Roberts, S. (2018). Consistent differences in fitness traits across multiple generations of Olympia oysters. Scientific Reports, 8(6080).

Smith, G., Lee, S., van Drongelen, W. (2018). A glimpse into the future of clinical neurophysiology: Can we use machines to interpret EEG? Clinical Neurophysiology.

Cecchini, N.M., Roychoudhry, S., Speed, D.J., Steffes, K., Tambe, A., Zodrow, K., Konstantinoff, K., Jung, H.W., Engle, N.L., Tschaplinski, T.J., Greenberg, J.T. (2018). Underground azelaic acid-conferred resistance to Pseudomonas syringae in Arabidopsis. MPMI.

Kathayat, R.S., Cao, Y., Elvira, P.D., Sandoz, P.A., Zaballa, M.E., Springer, M.Z., Drake, L.E., Macleod, K.F., van der Goot, F.G., Dickinson, B.C. (2018). Active and dynamic mitochondrial S-depalmitoylation revealed by targeted fluorescent probes. Nat Commun, 9:334.

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